Prupe.1G189200_v2.0.a1
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000469
Physical Location & Seq
Forward (+)
17437835 .. 17439052
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G189200.1

Sequence Viewer

Length: 801 bp
ATGCCATATTTCTACTTCTTTAGTGCATATGGTTTGAAAGAAGTTGGAGATATACCATTAGTTGAGGCATTATCAATGTTCCTCATTGTTTTAGGTCATGGATTCACTAATAGAAAGGTCCAAGAAAGGTTCCAACATTCTGGTGATACAGTGTCAAGGTGGTTTGGGATAATTCTAGATGTTGTTTGTCGTATGGCTAGTGATATCATAAGTCCACAAAACCCAAAATTTAGGAGAGTTCCGGATAAAATCAAAGCTGATTATCGATATTGGCCATATTTCAAAGATTGCATAGGGGCAATTGATGTACACATATACCAAAAAGGTATCACTACCCAAAATATTTTGGCTGTATGTGATTTTGACATGTGCTTTACTTTTGTGTGGGCTGGATGGGAAGGTAAATATTATCTAGTGGATGCAGGCTATCCACAAATCAAAGGATATTTAGGGCCATATAAGGGTAAGCGATATCATCTTCCGGATTTTCGACGTGGAAGTCAACCAAGAGAGAAGAAAGAAATATTTAACTACAGGCATTCTTCCCTAAGATGCACAATCGAAAGAACTTTTGGTGTTTGGAAAAATCGTTGCAGAATGATACGACAGATGCATAACTTTCCTATGGAAAAACAAACACAAAAAATTGTTGCTTCAAGGGCTCTTCACAACTTTATAAGATGTCATTCAATGACATATCAAGAATTCCAACCGTATGATGATAATTATATTATCTTCTTAAGAGATAATATCATTAATTCGGATATTATCAAGTCCAACTCGATCCCTACGAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

267

Amino Acids

31.52

Weight (kDa)

9.4

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 677
AasI GACNNNNNNGTC 1 cut(s) 498
AccIII TCCGGA 2 cut(s) 241, 481
AclWI GGATC 1 cut(s) 778
AcoI YGGCCR 1 cut(s) 272
AcsI RAATTY 2 cut(s) 227, 704
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 461
AflII CTTAAG 1 cut(s) 739
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 4 cut(s) 37, 283, 657, 690
AjiI CACGTC 1 cut(s) 494
AjuI GAANNNNNNNTTGG 2 cut(s) 555, 587
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
AlwI GGATC 1 cut(s) 778
Aor13HI TCCGGA 2 cut(s) 241, 481
AoxI GGCC 2 cut(s) 272, 452
ApoI RAATTY 2 cut(s) 227, 704
AseI ATTAAT 1 cut(s) 756
AspS9I GGNCC 2 cut(s) 118, 452
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 118
BalI TGGCCA 1 cut(s) 274
BanII GRGCYC 1 cut(s) 664
BccI CCATC 1 cut(s) 387
BfaI CTAG 4 cut(s) 176, 198, 413, 799
BfmI CTRYAG 1 cut(s) 532
BfrI CTTAAG 1 cut(s) 739
Bme18I GGWCC 1 cut(s) 118
BmgBI CACGTC 1 cut(s) 494
BmgT120I GGNCC 2 cut(s) 118, 452
BmiI GGNNCC 1 cut(s) 131
BmsI GCATC 3 cut(s) 409, 542, 600
Bsa29I ATCGAT 1 cut(s) 265
BsaWI WCCGGW 2 cut(s) 241, 481
Bsc4I CCNNNNNNNGG 1 cut(s) 461
BseAI TCCGGA 2 cut(s) 241, 481
BseCI ATCGAT 1 cut(s) 265
BseGI GGATG 2 cut(s) 398, 424
BseLI CCNNNNNNNGG 1 cut(s) 461
BshFI GGCC 2 cut(s) 274, 454
BshVI ATCGAT 1 cut(s) 265
BsiSI CCGG 2 cut(s) 242, 482
BslI CCNNNNNNNGG 1 cut(s) 461
BsmI GAATGC 1 cut(s) 538
BsnI GGCC 2 cut(s) 274, 454
Bsp1286I GDGCHC 1 cut(s) 664
Bsp13I TCCGGA 2 cut(s) 241, 481
Bsp1407I TGTACA 1 cut(s) 307
Bsp143I GATC 1 cut(s) 783
BspANI GGCC 2 cut(s) 274, 454
BspDI ATCGAT 1 cut(s) 265
BspEI TCCGGA 2 cut(s) 241, 481
BspLI GGNNCC 1 cut(s) 131
BspPI GGATC 1 cut(s) 778
BspQI GCTCTTC 1 cut(s) 669
BspTI CTTAAG 1 cut(s) 739
BsrGI TGTACA 1 cut(s) 307
BssMI GATC 1 cut(s) 783
Bst4CI ACNGT 2 cut(s) 151, 714
Bst6I CTCTTC 1 cut(s) 669
BstAFI CTTAAG 1 cut(s) 739
BstAUI TGTACA 1 cut(s) 307
BstC8I GCNNGC 1 cut(s) 424
BstDEI CTNAG 1 cut(s) 548
BstF5I GGATG 2 cut(s) 398, 424
BstKTI GATC 1 cut(s) 786
BstMBI GATC 1 cut(s) 783
BstMWI GCNNNNNNNGC 1 cut(s) 659
BstNSI RCATGY 1 cut(s) 370
BstSFI CTRYAG 1 cut(s) 532
BstXI CCANNNNNNTGG 1 cut(s) 140
Bsu15I ATCGAT 1 cut(s) 265
BsuRI GGCC 2 cut(s) 274, 454
BsuTUI ATCGAT 1 cut(s) 265
BtrI CACGTC 1 cut(s) 494
BtsCI GGATG 2 cut(s) 398, 424
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 424
Cfr13I GGNCC 2 cut(s) 118, 452
ClaI ATCGAT 1 cut(s) 265
Csp6I GTAC 1 cut(s) 308
CviAII CATG 2 cut(s) 98, 367
CviJI RGCY 8 cut(s) 197, 257, 274, 350, 389, 426, 454, 662
CviKI_1 RGCY 8 cut(s) 197, 257, 274, 350, 389, 426, 454, 662
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 1 cut(s) 548
DpnI GATC 1 cut(s) 785
DpnII GATC 1 cut(s) 783
DrdI GACNNNNNNGTC 1 cut(s) 498
DseDI GACNNNNNNGTC 1 cut(s) 498
EaeI YGGCCR 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 669
EarI CTCTTC 1 cut(s) 669
Eco24I GRGCYC 1 cut(s) 664
Eco32I GATATC 2 cut(s) 205, 473
Eco47I GGWCC 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 704
EcoRV GATATC 2 cut(s) 205, 473
EcoT22I ATGCAT 1 cut(s) 615
EcoT38I GRGCYC 1 cut(s) 664
FaeI CATG 2 cut(s) 101, 370
FatI CATG 2 cut(s) 97, 366
FauNDI CATATG 1 cut(s) 28
FokI GGATG 2 cut(s) 405, 431
FriOI GRGCYC 1 cut(s) 664
FspBI CTAG 4 cut(s) 176, 198, 413, 799
HaeIII GGCC 2 cut(s) 274, 454
HapII CCGG 2 cut(s) 242, 482
Hin1II CATG 2 cut(s) 101, 370
HincII GTYRAC 1 cut(s) 503
HindII GTYRAC 1 cut(s) 503
HinfI GANTC 1 cut(s) 102
HpaII CCGG 2 cut(s) 242, 482
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 3 cut(s) 215, 310, 503
Hpy188I TCNGA 1 cut(s) 763
Hpy188III TCNNGA 4 cut(s) 176, 242, 482, 701
Hpy8I GTNNAC 3 cut(s) 215, 310, 503
Hpy99I CGWCG 1 cut(s) 495
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 2 cut(s) 151, 714
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 6 cut(s) 26, 291, 422, 555, 594, 613
HpyF10VI GCNNNNNNNGC 1 cut(s) 659
HpyF3I CTNAG 1 cut(s) 548
HpySE526I ACGT 1 cut(s) 493
Hsp92II CATG 2 cut(s) 101, 370
Kpn2I TCCGGA 2 cut(s) 241, 481
Kzo9I GATC 1 cut(s) 783
LguI GCTCTTC 1 cut(s) 669
LpnPI CCDG 6 cut(s) 126, 255, 375, 408, 495, 520
LweI GCATC 3 cut(s) 409, 542, 600
MaeI CTAG 4 cut(s) 176, 198, 413, 799
MaeII ACGT 1 cut(s) 493
MalI GATC 1 cut(s) 785
MboI GATC 1 cut(s) 783
MboII GAAGA 5 cut(s) 470, 526, 534, 656, 727
MfeI CAATTG 1 cut(s) 300
MhlI GDGCHC 1 cut(s) 664
MlsI TGGCCA 1 cut(s) 274
MluCI AATT 7 cut(s) 171, 227, 300, 645, 704, 724, 757
MluNI TGGCCA 1 cut(s) 274
MmeI TCCRAC 4 cut(s) 25, 157, 733, 801
MnlI CCTC 2 cut(s) 58, 92
Mox20I TGGCCA 1 cut(s) 274
Mph1103I ATGCAT 1 cut(s) 615
MroI TCCGGA 2 cut(s) 241, 481
MscI TGGCCA 1 cut(s) 274
MseI TTAA 3 cut(s) 528, 740, 756
MslI CAYNNNNRTG 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 274
MspCI CTTAAG 1 cut(s) 739
MspI CCGG 2 cut(s) 242, 482
MunI CAATTG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 538
MwoI GCNNNNNNNGC 1 cut(s) 659
NdeI CATATG 1 cut(s) 28
NdeII GATC 1 cut(s) 783
NlaIII CATG 2 cut(s) 101, 370
NlaIV GGNNCC 1 cut(s) 131
NsiI ATGCAT 1 cut(s) 615
NspI RCATGY 1 cut(s) 370
PciI ACATGT 1 cut(s) 366
PciSI GCTCTTC 1 cut(s) 669
PcsI WCGNNNNNNNCGW 1 cut(s) 788
PctI GAATGC 1 cut(s) 538
PfeI GAWTC 1 cut(s) 102
PscI ACATGT 1 cut(s) 366
PshBI ATTAAT 1 cut(s) 756
PsiI TTATAA 1 cut(s) 677
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 2 cut(s) 118, 452
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 669
SaqAI TTAA 3 cut(s) 528, 740, 756
Sau3AI GATC 1 cut(s) 783
Sau96I GGNCC 2 cut(s) 118, 452
SduI GDGCHC 1 cut(s) 664
SetI ASST 8 cut(s) 97, 120, 131, 161, 259, 328, 403, 496
SfaNI GCATC 3 cut(s) 409, 542, 600
SfcI CTRYAG 1 cut(s) 532
SinI GGWCC 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 739
SmoI CTYRAG 1 cut(s) 739
Sse9I AATT 7 cut(s) 171, 227, 300, 645, 704, 724, 757
SspI AATATT 3 cut(s) 343, 407, 525
SspMI CTAG 4 cut(s) 176, 198, 413, 799
TaaI ACNGT 2 cut(s) 151, 714
TaiI ACGT 1 cut(s) 496
TaqI TCGA 4 cut(s) 265, 490, 561, 782
TasI AATT 7 cut(s) 171, 227, 300, 645, 704, 724, 757
TatI WGTACW 1 cut(s) 307
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 3 cut(s) 528, 740, 756
Tru9I TTAA 3 cut(s) 528, 740, 756
TscAI CASTG 1 cut(s) 156
TspRI CASTG 1 cut(s) 156
Vha464I CTTAAG 1 cut(s) 739
VpaK11BI GGWCC 1 cut(s) 118
VspI ATTAAT 1 cut(s) 756
XapI RAATTY 2 cut(s) 227, 704
XbaI TCTAGA 1 cut(s) 175
XceI RCATGY 1 cut(s) 370
XspI CTAG 4 cut(s) 176, 198, 413, 799
Zsp2I ATGCAT 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.