pycom02g00900
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000469
Physical Location & Seq
Reverse (-)
535284 .. 535601
318 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g00900.1

Sequence Viewer

Length: 318 bp
ATGCATTCTTCTCTTAGGAGCATCATTGAACGAACTTTTGGGGTATGGAAGAAAAGATGGGCAATTTTAAGGGATATGCCTAATTACCCGTTCAATAAGCAAGTGAAGATTGTCATTGCTACAATGGCTCTTCATAACTACATACGGAGGTATTCTGAACGTGATCGTCATTTTGATGACCCCAGGGACTTTTGTGAAGAAAGCGATAGTAGTGATGATGATGATGATGAATATCAAAATTATCAAGTTGAAGGATCACATGAGATAGAGGCATTAAGAAATAGAATAGCAACAAGTTTGATGAATGCATCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

106

Amino Acids

12.56

Weight (kDa)

5.5

Isoelectric Point (pI)

75.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDE_Tnp_4 PF13359 2 - 46 6.1e-06 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 262
AgsI TTSAA 3 cut(s) 29, 94, 251
AjnI CCWGG 1 cut(s) 182
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AlwI GGATC 1 cut(s) 262
BccI CCATC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 182, 183
Bse3DI GCAATG 1 cut(s) 114
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 2 cut(s) 182, 183
BseJI GATNNNNATC 1 cut(s) 231
BseMI GCAATG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 2 cut(s) 4, 310
Bsp143I GATC 2 cut(s) 163, 254
BspPI GGATC 1 cut(s) 262
BspQI GCTCTTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 114
BssECI CCNNGG 2 cut(s) 182, 183
BssMI GATC 2 cut(s) 163, 254
Bst2UI CCWGG 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 14
BstKTI GATC 2 cut(s) 166, 257
BstMBI GATC 2 cut(s) 163, 254
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 182
CviAII CATG 1 cut(s) 260
CviJI RGCY 1 cut(s) 128
CviKI_1 RGCY 1 cut(s) 128
DdeI CTNAG 1 cut(s) 14
DpnI GATC 2 cut(s) 165, 256
DpnII GATC 2 cut(s) 163, 254
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 182
EcoT22I ATGCAT 2 cut(s) 6, 310
FaeI CATG 1 cut(s) 263
FaiI YATR 5 cut(s) 46, 77, 135, 143, 261
FaqI GGGAC 1 cut(s) 200
FatI CATG 1 cut(s) 259
Hin1II CATG 1 cut(s) 263
Hpy188I TCNGA 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 4, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 1 cut(s) 263
Kzo9I GATC 2 cut(s) 163, 254
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 2 cut(s) 169, 196
LweI GCATC 1 cut(s) 30
MaeII ACGT 1 cut(s) 160
MalI GATC 2 cut(s) 165, 256
MboI GATC 2 cut(s) 163, 254
MboII GAAGA 4 cut(s) 61, 118, 122, 209
MluCI AATT 4 cut(s) 63, 82, 238, 313
MnlI CCTC 2 cut(s) 141, 262
Mph1103I ATGCAT 2 cut(s) 6, 310
MseI TTAA 2 cut(s) 68, 275
MslI CAYNNNNRTG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 184
Mva1269I GAATGC 2 cut(s) 4, 310
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 2 cut(s) 163, 254
NlaIII CATG 1 cut(s) 263
NsiI ATGCAT 2 cut(s) 6, 310
PasI CCCWGGG 1 cut(s) 183
PciSI GCTCTTC 1 cut(s) 135
PctI GAATGC 2 cut(s) 4, 310
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 174
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 68, 275
Sau3AI GATC 2 cut(s) 163, 254
ScrFI CCNGG 1 cut(s) 184
SetI ASST 2 cut(s) 152, 163
SfaNI GCATC 1 cut(s) 30
SgeI CNNG 8 cut(s) 100, 113, 173, 195, 196, 257, 272, 306
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 4 cut(s) 63, 82, 238, 313
StyD4I CCNGG 1 cut(s) 182
TaiI ACGT 1 cut(s) 163
TasI AATT 4 cut(s) 63, 82, 238, 313
Tru1I TTAA 2 cut(s) 68, 275
Tru9I TTAA 2 cut(s) 68, 275
TspDTI ATGAA 3 cut(s) 122, 243, 317
TspGWI ACGGA 1 cut(s) 160
Zsp2I ATGCAT 2 cut(s) 6, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.