Rw2G050290
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000469
Physical Location & Seq
Forward (+)
77935229 .. 77936589
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G050290.1

Sequence Viewer

Length: 1089 bp
ATGGATGCTTCTGGAGATGAGGAGGAGATAGATCAAATTATATGTTTATGTGGTCGTCTTATTCAAGTCTATCTTGAAAAGTACATTCAGAAAACTCCATGTATGACAAGCTCCCAAACAGTCTTCATGATGCTTGTAAATGATTTGGGTAGGATATTGCAGGGTTCCAGAAACATGAGTATCGTTGAAATGTTGGCTATGTTTCTTTATATTTTGGGACAAGGTCAGACTAATAGGAGTACACAAGAACGTTTTCAACGTTCTGGTGAGACGGTTAGTAGGTATTTTAATATAATGTTAAAGATTTTCTATAATATGGCAAAAGTGCTCATAAAGCCATTGGATCCGGAATTTAGGAGCATTCCACAAGAAATTCTAACTGATTCAAGATACATGCCTCATTTTAAGGATTGCATTGGTGCTATTGATGGTGTTCATGTTCAAGCTTCGATATCCCCATGTGATCAGGTGCCATATATTGGAAGAAAAGGGATACCCACCCAAAATGTATTGGCTATATGCAACTTCGACATGCAATTCACATTTGCATGTGCAGGGTGGGAAGGCACTGCCCATGATAGTAGAGTATTCTTATCAGCTCTACGTGATCCTCAATCGAATTTTCCTAAACCCCCAAATGGAAAATACTATGTGGTGGATGCCGGATATCCACAAATGAAGGGTTATTTAGGACCATATAAAGGTGAGCGGTACCACCTTCCACATTTCCGTAGAGGTGATGAGCCGACCGGTCATAAAGAAATATTCAATCATGCACATTCTTCACTTAGGGGTGTTATTGAGCGCACTTTTGGGGTATGGAAGAAGAAATGGAGTATTTTACGTGATATGCCTCACTTTCCTTATAAAAAACAAGTTAAGATAGTTATTGCTACTATGGCTCTTCATAACTACATACGAAGATATGCTCCACGAGATATTGATTTTGATGAAAGTGGAAATTACTCAAGTGAAGAGACTAGTGAAGAGATGGAGGATAATGAACATGATGGAGATGGTTCGGGAAGACAAGAAATGGAGGTGTTAAGAAATGTAATTGCACAAAGTCTAATGAATGCATCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

362

Amino Acids

41.52

Weight (kDa)

6.42

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 38 - 103 5.4e-20 Domain of unknown function (DUF8040)
DDE_Tnp_1 PF01609 136 - 302 9.3e-10 Transposase DDE domain
DDE_Tnp_4 PF13359 142 - 304 1.8e-21 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 867
Acc65I GGTACC 1 cut(s) 711
AccB1I GGYRCC 2 cut(s) 469, 711
AccB7I CCANNNNNTGG 1 cut(s) 479
AccBSI CCGCTC 1 cut(s) 709
AccIII TCCGGA 1 cut(s) 346
AciI CCGC 1 cut(s) 709
AclI AACGTT 2 cut(s) 250, 259
AclWI GGATC 3 cut(s) 338, 351, 602
AcsI RAATTY 3 cut(s) 350, 372, 619
AfaI GTAC 3 cut(s) 83, 241, 713
AfiI CCNNNNNNNGG 3 cut(s) 479, 638, 701
AgeI ACCGGT 1 cut(s) 749
AgsI TTSAA 7 cut(s) 65, 77, 188, 257, 387, 443, 769
AhlI ACTAGT 1 cut(s) 980
AluBI AGCT 3 cut(s) 111, 446, 599
AluI AGCT 3 cut(s) 111, 446, 599
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 2 cut(s) 263, 971
AlwI GGATC 3 cut(s) 338, 351, 602
Aor13HI TCCGGA 1 cut(s) 346
ApoI RAATTY 3 cut(s) 350, 372, 619
AsiGI ACCGGT 1 cut(s) 749
Asp700I GAANNNNTTC 1 cut(s) 252
Asp718I GGTACC 1 cut(s) 711
AspLEI GCGC 1 cut(s) 807
AspS9I GGNCC 1 cut(s) 692
AsuHPI GGTGA 3 cut(s) 278, 716, 749
AvaII GGWCC 1 cut(s) 692
BaeI ACNNNNGTAYC 2 cut(s) 163, 196
BamHI GGATCC 1 cut(s) 343
BanI GGYRCC 2 cut(s) 469, 711
BauI CACGAG 1 cut(s) 933
BbsI GAAGAC 2 cut(s) 115, 1033
Bbv12I GWGCWC 1 cut(s) 330
BccI CCATC 4 cut(s) 422, 985, 1004, 1010
BciVI GTATCC 1 cut(s) 486
BclI TGATCA 1 cut(s) 463
BcoDI GTCTC 2 cut(s) 263, 971
BcuI ACTAGT 1 cut(s) 980
BfaI CTAG 1 cut(s) 981
BfuI GTATCC 1 cut(s) 486
Bme18I GGWCC 1 cut(s) 692
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 4 cut(s) 166, 345, 471, 713
BmsI GCATC 2 cut(s) 120, 649
BpiI GAAGAC 2 cut(s) 115, 1033
BpmI CTGGAG 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 952
BsaAI YACGTR 2 cut(s) 605, 845
BsaWI WCCGGW 2 cut(s) 346, 749
Bsc4I CCNNNNNNNGG 3 cut(s) 479, 638, 701
Bse118I RCCGGY 1 cut(s) 749
BseAI TCCGGA 1 cut(s) 346
BseGI GGATG 2 cut(s) 10, 664
BseLI CCNNNNNNNGG 3 cut(s) 479, 638, 701
BseRI GAGGAG 2 cut(s) 35, 38
BsgI GTGCAG 1 cut(s) 573
Bsh1285I CGRYCG 1 cut(s) 750
BshNI GGYRCC 2 cut(s) 469, 711
BshTI ACCGGT 1 cut(s) 749
BsiEI CGRYCG 1 cut(s) 750
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 3 cut(s) 347, 663, 750
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 3 cut(s) 479, 638, 701
BsmAI GTCTC 2 cut(s) 263, 971
BsmBI CGTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 231
BsmI GAATGC 2 cut(s) 360, 1081
Bsp1286I GDGCHC 1 cut(s) 330
Bsp13I TCCGGA 1 cut(s) 346
Bsp143I GATC 4 cut(s) 31, 343, 463, 607
BspACI CCGC 1 cut(s) 709
BspEI TCCGGA 1 cut(s) 346
BspHI TCATGA 1 cut(s) 126
BspLI GGNNCC 4 cut(s) 166, 345, 471, 713
BspPI GGATC 3 cut(s) 338, 351, 602
BspQI GCTCTTC 1 cut(s) 909
BspT107I GGYRCC 2 cut(s) 469, 711
BsrBI CCGCTC 1 cut(s) 709
BsrFI RCCGGY 1 cut(s) 749
BssAI RCCGGY 1 cut(s) 749
BssMI GATC 4 cut(s) 31, 343, 463, 607
BssSI CACGAG 1 cut(s) 933
Bst2BI CACGAG 1 cut(s) 933
Bst4CI ACNGT 2 cut(s) 121, 274
Bst6I CTCTTC 3 cut(s) 909, 969, 981
BstBAI YACGTR 2 cut(s) 605, 845
BstDEI CTNAG 2 cut(s) 788, 1086
BstF5I GGATG 2 cut(s) 10, 664
BstHHI GCGC 1 cut(s) 807
BstKTI GATC 4 cut(s) 34, 346, 466, 610
BstMAI GTCTC 2 cut(s) 263, 971
BstMBI GATC 4 cut(s) 31, 343, 463, 607
BstMCI CGRYCG 1 cut(s) 750
BstMWI GCNNNNNNNGC 2 cut(s) 334, 899
BstNSI RCATGY 3 cut(s) 397, 535, 552
BstV2I GAAGAC 2 cut(s) 115, 1033
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuI GTATCC 1 cut(s) 486
BtsCI GGATG 2 cut(s) 10, 664
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 1 cut(s) 567
CciI TCATGA 1 cut(s) 126
CfoI GCGC 1 cut(s) 807
Cfr10I RCCGGY 1 cut(s) 749
Cfr13I GGNCC 1 cut(s) 692
Csp6I GTAC 3 cut(s) 82, 240, 712
CspAI ACCGGT 1 cut(s) 749
CviJI RGCY 8 cut(s) 111, 197, 337, 446, 515, 599, 745, 902
CviKI_1 RGCY 8 cut(s) 111, 197, 337, 446, 515, 599, 745, 902
CviQI GTAC 3 cut(s) 82, 240, 712
DdeI CTNAG 2 cut(s) 788, 1086
DpnI GATC 4 cut(s) 33, 345, 465, 609
DpnII GATC 4 cut(s) 31, 343, 463, 607
Eam1104I CTCTTC 3 cut(s) 909, 969, 981
EarI CTCTTC 3 cut(s) 909, 969, 981
Eco32I GATATC 2 cut(s) 453, 668
Eco47I GGWCC 1 cut(s) 692
EcoRV GATATC 2 cut(s) 453, 668
EcoT22I ATGCAT 1 cut(s) 1081
Esp3I CGTCTC 1 cut(s) 263
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FaqI GGGAC 1 cut(s) 231
FbaI TGATCA 1 cut(s) 463
FokI GGATG 2 cut(s) 17, 671
FspBI CTAG 1 cut(s) 981
GlaI GCGC 1 cut(s) 806
GsuI CTGGAG 1 cut(s) 33
HapII CCGG 3 cut(s) 347, 663, 750
HhaI GCGC 1 cut(s) 807
Hin6I GCGC 1 cut(s) 805
HinP1I GCGC 1 cut(s) 805
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 1 cut(s) 383
HpaII CCGG 3 cut(s) 347, 663, 750
HphI GGTGA 3 cut(s) 278, 716, 749
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 2 cut(s) 90, 228
Hpy188III TCNNGA 7 cut(s) 12, 74, 127, 168, 347, 387, 1023
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 557, 673, 728
HpyCH4III ACNGT 2 cut(s) 121, 274
HpyCH4IV ACGT 4 cut(s) 250, 259, 604, 844
HpyCH4V TGCA 9 cut(s) 160, 414, 522, 535, 548, 554, 776, 1061, 1079
HpyF10VI GCNNNNNNNGC 2 cut(s) 334, 899
HpyF3I CTNAG 2 cut(s) 788, 1086
HpySE526I ACGT 4 cut(s) 250, 259, 604, 844
HspAI GCGC 1 cut(s) 805
Kpn2I TCCGGA 1 cut(s) 346
KpnI GGTACC 1 cut(s) 715
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 4 cut(s) 31, 343, 463, 607
LguI GCTCTTC 1 cut(s) 909
LmnI GCTCC 3 cut(s) 116, 357, 934
LpnPI CCDG 8 cut(s) 146, 181, 249, 360, 452, 540, 676, 763
LweI GCATC 2 cut(s) 120, 649
MaeI CTAG 1 cut(s) 981
MaeII ACGT 4 cut(s) 250, 259, 604, 844
MalI GATC 4 cut(s) 33, 345, 465, 609
MbiI CCGCTC 1 cut(s) 709
MboI GATC 4 cut(s) 31, 343, 463, 607
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 7 cut(s) 36, 350, 372, 536, 619, 961, 1056
MnlI CCTC 8 cut(s) 13, 16, 408, 621, 728, 864, 988, 1033
Mph1103I ATGCAT 1 cut(s) 1081
MroI TCCGGA 1 cut(s) 346
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 5 cut(s) 288, 299, 405, 879, 1046
MslI CAYNNNNRTG 1 cut(s) 547
MspI CCGG 3 cut(s) 347, 663, 750
Mva1269I GAATGC 2 cut(s) 360, 1081
MwoI GCNNNNNNNGC 2 cut(s) 334, 899
NdeII GATC 4 cut(s) 31, 343, 463, 607
NlaIV GGNNCC 4 cut(s) 166, 345, 471, 713
NsiI ATGCAT 1 cut(s) 1081
NspI RCATGY 3 cut(s) 397, 535, 552
PagI TCATGA 1 cut(s) 126
PciSI GCTCTTC 1 cut(s) 909
PcsI WCGNNNNNNNCGW 1 cut(s) 256
PctI GAATGC 2 cut(s) 360, 1081
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 383
PflFI GACNNNGTC 1 cut(s) 222
PflMI CCANNNNNTGG 1 cut(s) 479
PinAI ACCGGT 1 cut(s) 749
Ppu21I YACGTR 2 cut(s) 605, 845
PsiI TTATAA 1 cut(s) 867
Psp1406I AACGTT 2 cut(s) 250, 259
PspN4I GGNNCC 4 cut(s) 166, 345, 471, 713
PspPI GGNCC 1 cut(s) 692
PsuI RGATCY 1 cut(s) 343
PsyI GACNNNGTC 1 cut(s) 222
RsaI GTAC 3 cut(s) 83, 241, 713
RsaNI GTAC 3 cut(s) 82, 240, 712
RseI CAYNNNNRTG 1 cut(s) 547
SapI GCTCTTC 1 cut(s) 909
SaqAI TTAA 5 cut(s) 288, 299, 405, 879, 1046
Sau3AI GATC 4 cut(s) 31, 343, 463, 607
Sau96I GGNCC 1 cut(s) 692
SduI GDGCHC 1 cut(s) 330
SfaNI GCATC 2 cut(s) 120, 649
SinI GGWCC 1 cut(s) 692
SmiMI CAYNNNNRTG 1 cut(s) 547
SmlI CTYRAG 1 cut(s) 967
SmoI CTYRAG 1 cut(s) 967
SpeI ACTAGT 1 cut(s) 980
Sse9I AATT 7 cut(s) 36, 350, 372, 536, 619, 961, 1056
SsiI CCGC 1 cut(s) 709
SspI AATATT 1 cut(s) 765
SspMI CTAG 1 cut(s) 981
TaaI ACNGT 2 cut(s) 121, 274
TaiI ACGT 4 cut(s) 253, 262, 607, 847
TaqI TCGA 3 cut(s) 449, 528, 617
TasI AATT 7 cut(s) 36, 350, 372, 536, 619, 961, 1056
TatI WGTACW 2 cut(s) 81, 239
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 5 cut(s) 288, 299, 405, 879, 1046
Tru9I TTAA 5 cut(s) 288, 299, 405, 879, 1046
TscAI CASTG 1 cut(s) 574
TspDTI ATGAA 7 cut(s) 115, 425, 692, 896, 966, 1017, 1088
TspGWI ACGGA 1 cut(s) 719
TspRI CASTG 1 cut(s) 574
Tth111I GACNNNGTC 1 cut(s) 222
Van91I CCANNNNNTGG 1 cut(s) 479
VpaK11BI GGWCC 1 cut(s) 692
XapI RAATTY 3 cut(s) 350, 372, 619
XceI RCATGY 3 cut(s) 397, 535, 552
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 1 cut(s) 981
Zsp2I ATGCAT 1 cut(s) 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.