Rmu_sc0000950.1_g000002
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000950.1
OG0000469
Physical Location & Seq
Reverse (-)
4707 .. 5117
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000950.1_g000002.1.cds

Sequence Viewer

Length: 411 bp
atgaagggttatttaggaccatataaaggtgagcggtaccaccttccacattttcgtagaggtgatgaaccgaccggtcataaagaaatattcaatcatgcacattcttcactaaggggcgctattgagcgcacttttgggatatggaaaaagaaatggagtattttatgtgatatgccacattttccttatgaaaaacaagtgaaaatagttattgctactatggctcttcataattacataagacatgctcaacaagatattgattttgatgaaagtggaaattactcaagtgaagagactagtgaagagatggaggataatgaacatgatggagatggtttaggaagacaagaaatggaggtgttaagaaatgcaattgcacaaagtctaatgaattcatctatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

136

Amino Acids

15.78

Weight (kDa)

5.82

Isoelectric Point (pI)

54.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 36
AccB1I GGYRCC 1 cut(s) 36
AccBSI CCGCTC 1 cut(s) 34
AciI CCGC 1 cut(s) 34
AcsI RAATTY 1 cut(s) 397
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 26
AgeI ACCGGT 1 cut(s) 74
AgsI TTSAA 1 cut(s) 94
AhlI ACTAGT 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 397
AsiGI ACCGGT 1 cut(s) 74
Asp718I GGTACC 1 cut(s) 36
AspLEI GCGC 2 cut(s) 122, 132
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 41, 74
AvaII GGWCC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 355
BccI CCATC 3 cut(s) 307, 326, 332
BcoDI GTCTC 1 cut(s) 293
BcuI ACTAGT 1 cut(s) 302
BfaI CTAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 355
BpuEI CTTGAG 1 cut(s) 274
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 26
Bsh1285I CGRYCG 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 36
BshTI ACCGGT 1 cut(s) 74
BsiEI CGRYCG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 293
BspACI CCGC 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 38
BspQI GCTCTTC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 36
BsrBI CCGCTC 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 74
Bst6I CTCTTC 3 cut(s) 234, 291, 303
BstDEI CTNAG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 2 cut(s) 122, 132
BstMAI GTCTC 1 cut(s) 293
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 355
CfoI GCGC 2 cut(s) 122, 132
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 37
CspAI ACCGGT 1 cut(s) 74
CviAII CATG 3 cut(s) 98, 248, 329
CviJI RGCY 1 cut(s) 227
CviKI_1 RGCY 1 cut(s) 227
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 1 cut(s) 113
Eam1104I CTCTTC 3 cut(s) 234, 291, 303
EarI CTCTTC 3 cut(s) 234, 291, 303
Eco47I GGWCC 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 397
FaeI CATG 3 cut(s) 101, 251, 332
FatI CATG 3 cut(s) 97, 247, 328
FspBI CTAG 1 cut(s) 303
GlaI GCGC 2 cut(s) 121, 131
HaeII RGCGCY 1 cut(s) 123
HapII CCGG 1 cut(s) 75
HhaI GCGC 2 cut(s) 122, 132
Hin1II CATG 3 cut(s) 101, 251, 332
Hin6I GCGC 2 cut(s) 120, 130
HinP1I GCGC 2 cut(s) 120, 130
HpaII CCGG 1 cut(s) 75
HphI GGTGA 2 cut(s) 41, 74
HpyAV CCTTC 1 cut(s) 53
HpyCH4V TGCA 3 cut(s) 101, 377, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 3 cut(s) 101, 251, 332
HspAI GCGC 2 cut(s) 120, 130
KpnI GGTACC 1 cut(s) 40
LguI GCTCTTC 1 cut(s) 234
LpnPI CCDG 1 cut(s) 88
MaeI CTAG 1 cut(s) 303
MbiI CCGCTC 1 cut(s) 34
MboII GAAGA 5 cut(s) 99, 221, 308, 320, 360
MfeI CAATTG 1 cut(s) 378
MluCI AATT 4 cut(s) 235, 283, 378, 397
MnlI CCTC 3 cut(s) 53, 310, 355
MseI TTAA 1 cut(s) 368
MspI CCGG 1 cut(s) 75
MunI CAATTG 1 cut(s) 378
MwoI GCNNNNNNNGC 1 cut(s) 224
NlaIII CATG 3 cut(s) 101, 251, 332
NlaIV GGNNCC 1 cut(s) 38
NspI RCATGY 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 234
PinAI ACCGGT 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 1 cut(s) 17
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 368
Sau96I GGNCC 1 cut(s) 17
SetI ASST 4 cut(s) 31, 45, 64, 366
SgeI CNNG 9 cut(s) 87, 110, 212, 260, 269, 303, 315, 341, 365
SinI GGWCC 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
SpeI ACTAGT 1 cut(s) 302
Sse9I AATT 4 cut(s) 235, 283, 378, 397
SsiI CCGC 1 cut(s) 34
SspI AATATT 1 cut(s) 90
SspMI CTAG 1 cut(s) 303
TasI AATT 4 cut(s) 235, 283, 378, 397
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TspDTI ATGAA 8 cut(s) 17, 81, 207, 221, 288, 339, 390, 410
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 1 cut(s) 397
XceI RCATGY 1 cut(s) 251
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.