pycom17g21680
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000469
Physical Location & Seq
Forward (+)
20105086 .. 20105457
372 bp
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UTR
Exon/CDS
Intron
pycom17g21680.1

Sequence Viewer

Length: 372 bp
ATGTGGTTTCGTAGGGGTGCCGAACCAACGGGTCACAAAGAGGTATTCAACCACAGACATTCTTCTCTTAGGAGCATCATTGAACGAACTTTTGGGGTATGGAAGAAAAGATGGGCAATTTTAAGGGATATGCCTAATTACCCGTTCAATAAGCAAGTGAAGATTGTCATCGCTACAATGGCTCTTCATAACTACATATGGAGGTATTCTGAACGTGATCGTCATTTTGATGACCCCAGGGACTTTTGTGAAGAAAGCGATAGTAGTGATGATGATGATGATGAATATCAAAATTATCAAGTTGAAAGATCACATGAGATAGAGGCATTAAGAAATAGAATAGCAACAAGTTTGATGAATGCATCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

124

Amino Acids

14.89

Weight (kDa)

6.29

Isoelectric Point (pI)

67.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDE_Tnp_4 PF13359 5 - 64 6.4e-09 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AgsI TTSAA 4 cut(s) 49, 83, 148, 305
AjnI CCWGG 1 cut(s) 236
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
BanI GGYRCC 1 cut(s) 17
BccI CCATC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 84
BsaBI GATNNNNATC 2 cut(s) 167, 285
BsaJI CCNNGG 2 cut(s) 236, 237
Bse8I GATNNNNATC 2 cut(s) 167, 285
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 236, 237
BseJI GATNNNNATC 2 cut(s) 167, 285
BshNI GGYRCC 1 cut(s) 17
BslFI GGGAC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 364
Bsp143I GATC 2 cut(s) 217, 308
BspLI GGNNCC 1 cut(s) 19
BspQI GCTCTTC 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 17
BssECI CCNNGG 2 cut(s) 236, 237
BssMI GATC 2 cut(s) 217, 308
Bst2UI CCWGG 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 68
BstKTI GATC 2 cut(s) 220, 311
BstMBI GATC 2 cut(s) 217, 308
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BtgZI GCGATG 1 cut(s) 154
CviAII CATG 1 cut(s) 314
CviJI RGCY 1 cut(s) 182
CviKI_1 RGCY 1 cut(s) 182
DdeI CTNAG 1 cut(s) 68
DpnI GATC 2 cut(s) 219, 310
DpnII GATC 2 cut(s) 217, 308
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 236
EcoT22I ATGCAT 1 cut(s) 364
FaeI CATG 1 cut(s) 317
FaiI YATR 6 cut(s) 100, 131, 189, 197, 199, 315
FaqI GGGAC 1 cut(s) 254
FatI CATG 1 cut(s) 313
FauNDI CATATG 1 cut(s) 197
Hin1II CATG 1 cut(s) 317
Hpy188I TCNGA 1 cut(s) 211
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 1 cut(s) 317
Kzo9I GATC 2 cut(s) 217, 308
LguI GCTCTTC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 2 cut(s) 223, 250
LweI GCATC 1 cut(s) 84
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 32
MalI GATC 2 cut(s) 219, 310
MboI GATC 2 cut(s) 217, 308
MboII GAAGA 5 cut(s) 54, 115, 172, 176, 263
MluCI AATT 4 cut(s) 117, 136, 292, 367
MnlI CCTC 3 cut(s) 34, 195, 316
Mph1103I ATGCAT 1 cut(s) 364
MseI TTAA 2 cut(s) 122, 329
MslI CAYNNNNRTG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 238
Mva1269I GAATGC 1 cut(s) 364
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeI CATATG 1 cut(s) 197
NdeII GATC 2 cut(s) 217, 308
NlaIII CATG 1 cut(s) 317
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 32
NsiI ATGCAT 1 cut(s) 364
PasI CCCWGGG 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 189
PctI GAATGC 1 cut(s) 364
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 228
SapI GCTCTTC 1 cut(s) 189
SaqAI TTAA 2 cut(s) 122, 329
Sau3AI GATC 2 cut(s) 217, 308
ScrFI CCNGG 1 cut(s) 238
SetI ASST 3 cut(s) 45, 206, 217
SfaNI GCATC 1 cut(s) 84
SgeI CNNG 9 cut(s) 42, 154, 167, 227, 249, 250, 311, 326, 360
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 4 cut(s) 117, 136, 292, 367
StyD4I CCNGG 1 cut(s) 236
TaiI ACGT 1 cut(s) 217
TasI AATT 4 cut(s) 117, 136, 292, 367
Tru1I TTAA 2 cut(s) 122, 329
Tru9I TTAA 2 cut(s) 122, 329
TseFI GTSAC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 3 cut(s) 176, 297, 371
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.