Rmu_sc0000240.1_g000063
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000240.1
OG0000469
Physical Location & Seq
Reverse (-)
288614 .. 289646
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000240.1_g000063.1.cds

Sequence Viewer

Length: 795 bp
atgctcaagattttctataatatggcgaaagtgctcataaagccagaagatcccgaatttacaagcatcccaaatgaaattctaaatgactcaagatacatgcctcattttaaggattgtattggcgctattgatggtgttcatgttcaagcttcaatttctccatgtgaccaagtgccatacattggccgaaaaggaacacccacccaaaatattttggctatatgcaacttcaacatgcaattcacatttgcatgtgcagggtgggaaggcagtgcccatgacagtagagtatttttatcggctttccgcaatcctcaatcgaattttcctaaacccccaaatggaaaatattatgtggtggatgccggatacccacaaatgaaaggttttttaggaccgtataaaggtgagcggtatcaccttccacattttcgtagaggtgatgaaccgacgggtcataaagaaatatttaatcatgcacattcttcacttaggagtgttattgagcgcacttttggggtatggaaaaaaaagtggagtattttacgtgatatgccaagctttccttatgataaacaagtgaaaatagttattgctacaatggctcttcataactacataagaagatatgctcaacaagatcatgattttgatgaaagtgaagattactcaagtgaagacaacaatgaagagatggaagacaatgcatatgaagaagatggtccgggaagacaagaaatggagaatttaagaaatacaattgcacaaagtctaatgaatgcatctacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

264

Amino Acids

30.39

Weight (kDa)

5.93

Isoelectric Point (pI)

57.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 185
AccBSI CCGCTC 1 cut(s) 415
AciI CCGC 2 cut(s) 310, 415
AclWI GGATC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 4 cut(s) 56, 78, 325, 748
AfiI CCNNNNNNNGG 3 cut(s) 185, 344, 407
AgsI TTSAA 3 cut(s) 149, 156, 235
AluBI AGCT 2 cut(s) 152, 564
AluI AGCT 2 cut(s) 152, 564
Alw21I GWGCWC 1 cut(s) 36
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 187
ApoI RAATTY 4 cut(s) 56, 78, 325, 748
AspLEI GCGC 2 cut(s) 128, 513
AspS9I GGNCC 2 cut(s) 398, 725
AsuC2I CCSGG 1 cut(s) 729
AsuHPI GGTGA 3 cut(s) 413, 422, 455
AvaII GGWCC 2 cut(s) 398, 725
BaeGI GKGCMC 1 cut(s) 280
BbsI GAAGAC 3 cut(s) 687, 708, 739
Bbv12I GWGCWC 1 cut(s) 36
BccI CCATC 3 cut(s) 128, 691, 716
BciVI GTATCC 1 cut(s) 365
BcnI CCSGG 1 cut(s) 729
BfoI RGCGCY 1 cut(s) 129
BfuI GTATCC 1 cut(s) 365
Bme1390I CCNGG 1 cut(s) 729
Bme18I GGWCC 2 cut(s) 398, 725
BmgT120I GGNCC 2 cut(s) 398, 725
BmrFI CCNGG 1 cut(s) 729
BmsI GCATC 2 cut(s) 75, 355
BpiI GAAGAC 3 cut(s) 687, 708, 739
BpuEI CTTGAG 2 cut(s) 76, 658
BpuMI CCSGG 1 cut(s) 729
BsaAI YACGTR 1 cut(s) 551
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 344, 407
BseGI GGATG 2 cut(s) 66, 370
BseLI CCNNNNNNNGG 3 cut(s) 185, 344, 407
BseSI GKGCMC 1 cut(s) 280
BsgI GTGCAG 1 cut(s) 279
BshFI GGCC 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 2 cut(s) 369, 728
BslI CCNNNNNNNGG 3 cut(s) 185, 344, 407
BsmI GAATGC 1 cut(s) 787
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 2 cut(s) 36, 280
Bsp143I GATC 2 cut(s) 49, 643
BspACI CCGC 2 cut(s) 310, 415
BspANI GGCC 1 cut(s) 189
BspHI TCATGA 1 cut(s) 646
BspPI GGATC 1 cut(s) 44
BspQI GCTCTTC 1 cut(s) 615
BsrBI CCGCTC 1 cut(s) 415
BssMI GATC 2 cut(s) 49, 643
Bst4CI ACNGT 2 cut(s) 287, 402
Bst6I CTCTTC 2 cut(s) 615, 687
BstBAI YACGTR 1 cut(s) 551
BstDEI CTNAG 2 cut(s) 494, 792
BstF5I GGATG 2 cut(s) 66, 370
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 2 cut(s) 128, 513
BstKTI GATC 2 cut(s) 52, 646
BstMBI GATC 2 cut(s) 49, 643
BstMWI GCNNNNNNNGC 2 cut(s) 40, 605
BstNSI RCATGY 3 cut(s) 103, 241, 258
BstSCI CCNGG 1 cut(s) 727
BstSLI GKGCMC 1 cut(s) 280
BstV2I GAAGAC 3 cut(s) 687, 708, 739
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 2 cut(s) 66, 370
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 280
CciI TCATGA 1 cut(s) 646
CfoI GCGC 2 cut(s) 128, 513
Cfr13I GGNCC 2 cut(s) 398, 725
CviAII CATG 8 cut(s) 100, 143, 165, 238, 255, 281, 479, 647
CviJI RGCY 7 cut(s) 43, 152, 189, 221, 305, 564, 608
CviKI_1 RGCY 7 cut(s) 43, 152, 189, 221, 305, 564, 608
DdeI CTNAG 2 cut(s) 494, 792
DpnI GATC 2 cut(s) 51, 645
DpnII GATC 2 cut(s) 49, 643
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 615, 687
EarI CTCTTC 2 cut(s) 615, 687
Eco47I GGWCC 2 cut(s) 398, 725
EcoT22I ATGCAT 2 cut(s) 712, 787
FaeI CATG 8 cut(s) 103, 146, 168, 241, 258, 284, 482, 650
FalI AAGNNNNNCTT 2 cut(s) 553, 585
FatI CATG 8 cut(s) 99, 142, 164, 237, 254, 280, 478, 646
FauNDI CATATG 1 cut(s) 712
FokI GGATG 2 cut(s) 53, 377
GlaI GCGC 2 cut(s) 127, 512
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 1 cut(s) 189
HapII CCGG 2 cut(s) 369, 728
HhaI GCGC 2 cut(s) 128, 513
Hin1II CATG 8 cut(s) 103, 146, 168, 241, 258, 284, 482, 650
Hin6I GCGC 2 cut(s) 126, 511
HinP1I GCGC 2 cut(s) 126, 511
HindIII AAGCTT 2 cut(s) 150, 562
HinfI GANTC 1 cut(s) 89
HpaII CCGG 2 cut(s) 369, 728
HphI GGTGA 3 cut(s) 413, 422, 455
Hpy188III TCNNGA 4 cut(s) 7, 53, 93, 647
Hpy99I CGWCG 1 cut(s) 457
HpyAV CCTTC 2 cut(s) 263, 434
HpyCH4III ACNGT 2 cut(s) 287, 402
HpyCH4IV ACGT 1 cut(s) 550
HpyCH4V TGCA 8 cut(s) 228, 241, 254, 260, 482, 710, 767, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 605
HpyF3I CTNAG 2 cut(s) 494, 792
HpySE526I ACGT 1 cut(s) 550
Hsp92II CATG 8 cut(s) 103, 146, 168, 241, 258, 284, 482, 650
HspAI GCGC 2 cut(s) 126, 511
Kzo9I GATC 2 cut(s) 49, 643
LguI GCTCTTC 1 cut(s) 615
LpnPI CCDG 4 cut(s) 57, 246, 382, 741
LweI GCATC 2 cut(s) 75, 355
MaeII ACGT 1 cut(s) 550
MaeIII GTNAC 1 cut(s) 167
MalI GATC 2 cut(s) 51, 645
MbiI CCGCTC 1 cut(s) 415
MboI GATC 2 cut(s) 49, 643
MfeI CAATTG 1 cut(s) 762
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 2 cut(s) 36, 280
MluCI AATT 7 cut(s) 56, 78, 156, 242, 325, 748, 762
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 3 cut(s) 114, 327, 434
Mph1103I ATGCAT 2 cut(s) 712, 787
MseI TTAA 3 cut(s) 111, 474, 752
MslI CAYNNNNRTG 1 cut(s) 253
MspI CCGG 2 cut(s) 369, 728
MspR9I CCNGG 1 cut(s) 729
MunI CAATTG 1 cut(s) 762
Mva1269I GAATGC 1 cut(s) 787
MwoI GCNNNNNNNGC 2 cut(s) 40, 605
NciI CCSGG 1 cut(s) 729
NdeI CATATG 1 cut(s) 712
NdeII GATC 2 cut(s) 49, 643
NlaIII CATG 8 cut(s) 103, 146, 168, 241, 258, 284, 482, 650
NmuCI GTSAC 1 cut(s) 167
NsiI ATGCAT 2 cut(s) 712, 787
NspI RCATGY 3 cut(s) 103, 241, 258
PagI TCATGA 1 cut(s) 646
PciSI GCTCTTC 1 cut(s) 615
PctI GAATGC 1 cut(s) 787
PflMI CCANNNNNTGG 1 cut(s) 185
PfoI TCCNGGA 1 cut(s) 727
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
Ppu21I YACGTR 1 cut(s) 551
PspPI GGNCC 2 cut(s) 398, 725
PsuI RGATCY 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 253
SapI GCTCTTC 1 cut(s) 615
SaqAI TTAA 3 cut(s) 111, 474, 752
Sau3AI GATC 2 cut(s) 49, 643
Sau96I GGNCC 2 cut(s) 398, 725
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 729
SduI GDGCHC 2 cut(s) 36, 280
SetI ASST 7 cut(s) 154, 391, 412, 426, 445, 553, 566
SfaNI GCATC 2 cut(s) 75, 355
SinI GGWCC 2 cut(s) 398, 725
SmiMI CAYNNNNRTG 1 cut(s) 253
SmlI CTYRAG 3 cut(s) 5, 91, 673
SmoI CTYRAG 3 cut(s) 5, 91, 673
Sse9I AATT 7 cut(s) 56, 78, 156, 242, 325, 748, 762
SsiI CCGC 2 cut(s) 310, 415
SspI AATATT 3 cut(s) 214, 353, 471
StyD4I CCNGG 1 cut(s) 727
TaaI ACNGT 2 cut(s) 287, 402
TaiI ACGT 1 cut(s) 553
TaqI TCGA 1 cut(s) 323
TasI AATT 7 cut(s) 56, 78, 156, 242, 325, 748, 762
Tru1I TTAA 3 cut(s) 111, 474, 752
Tru9I TTAA 3 cut(s) 111, 474, 752
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 9 cut(s) 90, 131, 398, 462, 602, 672, 705, 729, 794
TspRI CASTG 1 cut(s) 280
Van91I CCANNNNNTGG 1 cut(s) 185
VpaK11BI GGWCC 2 cut(s) 398, 725
XapI RAATTY 4 cut(s) 56, 78, 325, 748
XceI RCATGY 3 cut(s) 103, 241, 258
Zsp2I ATGCAT 2 cut(s) 712, 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.