Rh4BG219200
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000469
Physical Location & Seq
Reverse (-)
37973791 .. 37977219
3429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG219200.1

Sequence Viewer

Length: 663 bp
ATGTCTATGGTCAATGAAGATAACCATTCTGATTCTGATAGTTCATCAGATCTTGAAGAGTTGGCTCAACATGTATTCATGTGTATGCAAATTTATGAGTATTACATGACATATGTAGACAAGATTCCATGTCACAATTCAGTATTATCAGGACATGATTATGTGCAAGAGTTGTTAAATGGACATCCTGATAGAATATATGACTCATTTCGCATGGACAAACATGTATTTAGAAGATTGTGCTCTACACTTCAGTCTTTACATTTATTGGAACATGACAGACATGTGGGGGTTGAAGAAGCAGTAGCAATTTTCTTATACATTGTGGGTCATAGCGAACGCATGAGAATGGCTGCTGAGCGTTTTCAAAGATCTAAAGATACAATTCACAGGGTATTTAAACGTGTGTTGAAAGCTCTATGCCGGTATGCTCCAAATATTATACGTCCTCATAGTGTTGGGGAGACACCTCCTGAAATTTTGAACAAAAGAAAGTTTTATCCGTATTTCGAGCAACTTCAGCCCGTCTACCAAATTAATGATTGGGTGGAGGCTCAATATGTAGTTTTGGCCGATAAAAATATCTCCAAATTATCTGTCAAATTCTACGTGGATTTGAAATACCAAGCCTCTTTGCCAAATTTGGCATGTATTATCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

220

Amino Acids

25.89

Weight (kDa)

6.45

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 46 - 142 1.6e-40 Domain of unknown function (DUF8040)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 117, 528
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 4 cut(s) 90, 477, 602, 640
AcuI CTGAAG 2 cut(s) 236, 503
AflIII ACRYGT 4 cut(s) 70, 223, 283, 403
AgsI TTSAA 6 cut(s) 56, 296, 368, 412, 484, 619
AluBI AGCT 1 cut(s) 416
AluI AGCT 1 cut(s) 416
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 458
AoxI GGCC 1 cut(s) 570
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 4 cut(s) 90, 477, 602, 640
ArsI GACNNNNNNTTYG 2 cut(s) 582, 614
AseI ATTAAT 1 cut(s) 537
AsuHPI GGTGA 1 cut(s) 649
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 458
BglII AGATCT 2 cut(s) 49, 371
BisI GCNGC 1 cut(s) 354
BlpI GCTNAGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 355
Bpu1102I GCTNAGC 1 cut(s) 357
BsaAI YACGTR 1 cut(s) 610
Bse118I RCCGGY 1 cut(s) 423
BseGI GGATG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 340
BshFI GGCC 1 cut(s) 572
BsiHKAI GWGCWC 1 cut(s) 245
BsiSI CCGG 1 cut(s) 424
BsmAI GTCTC 1 cut(s) 458
BsnI GGCC 1 cut(s) 572
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 2 cut(s) 49, 371
Bsp1720I GCTNAGC 1 cut(s) 357
BspANI GGCC 1 cut(s) 572
BspCNI CTCAG 1 cut(s) 349
BsrFI RCCGGY 1 cut(s) 423
BssAI RCCGGY 1 cut(s) 423
BssMI GATC 2 cut(s) 49, 371
Bst6I CTCTTC 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 610
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 2 cut(s) 52, 374
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 2 cut(s) 49, 371
BstMWI GCNNNNNNNGC 1 cut(s) 520
BstNSI RCATGY 4 cut(s) 74, 227, 287, 651
BstV1I GCAGC 1 cut(s) 340
BstX2I RGATCY 2 cut(s) 49, 371
BstYI RGATCY 2 cut(s) 49, 371
BsuRI GGCC 1 cut(s) 572
BtsCI GGATG 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 423
CviJI RGCY 7 cut(s) 65, 353, 416, 523, 554, 572, 629
CviKI_1 RGCY 7 cut(s) 65, 353, 416, 523, 554, 572, 629
DdeI CTNAG 1 cut(s) 357
DpnI GATC 2 cut(s) 51, 373
DpnII GATC 2 cut(s) 49, 371
DraI TTTAAA 1 cut(s) 400
EaeI YGGCCR 1 cut(s) 570
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco57I CTGAAG 2 cut(s) 236, 503
FauNDI CATATG 1 cut(s) 112
FblI GTMKAC 2 cut(s) 117, 528
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 354
GluI GCNGC 1 cut(s) 354
HaeIII GGCC 1 cut(s) 572
HapII CCGG 1 cut(s) 424
HinfI GANTC 3 cut(s) 32, 124, 203
HpaII CCGG 1 cut(s) 424
HphI GGTGA 1 cut(s) 649
Hpy166II GTNNAC 2 cut(s) 118, 529
Hpy188I TCNGA 3 cut(s) 31, 37, 49
Hpy188III TCNNGA 4 cut(s) 53, 150, 188, 473
Hpy8I GTNNAC 2 cut(s) 118, 529
HpyCH4IV ACGT 3 cut(s) 403, 445, 609
HpyCH4V TGCA 2 cut(s) 88, 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 520
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 3 cut(s) 403, 445, 609
Kzo9I GATC 2 cut(s) 49, 371
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 5 cut(s) 135, 201, 376, 437, 486
Lsp1109I GCAGC 1 cut(s) 340
MaeII ACGT 3 cut(s) 403, 445, 609
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 51, 373
MboI GATC 2 cut(s) 49, 371
MboII GAAGA 4 cut(s) 29, 68, 246, 308
MflI RGATCY 2 cut(s) 49, 371
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 9 cut(s) 90, 136, 309, 384, 477, 534, 590, 602, 640
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 4 cut(s) 459, 480, 544, 640
MseI TTAA 3 cut(s) 176, 399, 537
MslI CAYNNNNRTG 3 cut(s) 83, 159, 347
MspI CCGG 1 cut(s) 424
MwoI GCNNNNNNNGC 1 cut(s) 520
NdeI CATATG 1 cut(s) 112
NdeII GATC 2 cut(s) 49, 371
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 4 cut(s) 74, 227, 287, 651
PciI ACATGT 3 cut(s) 70, 223, 283
PfeI GAWTC 2 cut(s) 32, 124
PkrI GCNGC 1 cut(s) 355
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
Ppu21I YACGTR 1 cut(s) 610
PscI ACATGT 3 cut(s) 70, 223, 283
PshBI ATTAAT 1 cut(s) 537
PsuI RGATCY 2 cut(s) 49, 371
RseI CAYNNNNRTG 3 cut(s) 83, 159, 347
SaqAI TTAA 3 cut(s) 176, 399, 537
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 2 cut(s) 49, 371
SchI GAGTC 1 cut(s) 197
SduI GDGCHC 1 cut(s) 245
SetI ASST 6 cut(s) 406, 418, 448, 472, 612, 662
SmiMI CAYNNNNRTG 3 cut(s) 83, 159, 347
Sse9I AATT 9 cut(s) 90, 136, 309, 384, 477, 534, 590, 602, 640
SspI AATATT 1 cut(s) 439
TaiI ACGT 3 cut(s) 406, 448, 612
TaqI TCGA 1 cut(s) 510
TasI AATT 9 cut(s) 90, 136, 309, 384, 477, 534, 590, 602, 640
TfiI GAWTC 2 cut(s) 32, 124
Tru1I TTAA 3 cut(s) 176, 399, 537
Tru9I TTAA 3 cut(s) 176, 399, 537
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 30, 33, 67
TspGWI ACGGA 1 cut(s) 492
VspI ATTAAT 1 cut(s) 537
XapI RAATTY 4 cut(s) 90, 477, 602, 640
XceI RCATGY 4 cut(s) 74, 227, 287, 651
XmiI GTMKAC 2 cut(s) 117, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.