Rmu_sc0001597.1_g000014
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001597.1
OG0000469
Physical Location & Seq
Forward (+)
33151 .. 33564
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001597.1_g000014.1.cds

Sequence Viewer

Length: 414 bp
atgaaaggttatttaggaccatataaaggtgagcggtaccaccttccacatttccgtagaggtgatgagttgacagatcataaagaaatattcaatcatgcacattcttcacataggggtgttattgagcgcacttttggggtatggaagaagaaatggagtattttacgtgatatgcctcactttccttatgaaaaacaagttaagatagttattgctactatggctcttcataactacatacgaagatatgctccacgagatattgattttgatgaaagtggaaattactcaagtgaagagactagtgaagagatggaggataatgaacatgatggagatggtcctggaagacaagaaatggaggtgttaagaaatgcaattgcacaaagtctaatgaatgcatctacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

137

Amino Acids

16.08

Weight (kDa)

6.13

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 36
AccB1I GGYRCC 1 cut(s) 36
AccBSI CCGCTC 1 cut(s) 34
AciI CCGC 1 cut(s) 34
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 1 cut(s) 94
AhlI ACTAGT 1 cut(s) 305
AjnI CCWGG 1 cut(s) 346
Alw26I GTCTC 1 cut(s) 296
Asp718I GGTACC 1 cut(s) 36
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 2 cut(s) 17, 344
AsuHPI GGTGA 2 cut(s) 41, 74
AvaII GGWCC 2 cut(s) 17, 344
BanI GGYRCC 1 cut(s) 36
BauI CACGAG 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 358
BccI CCATC 3 cut(s) 310, 329, 335
BciT130I CCWGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 296
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 2 cut(s) 17, 344
BmgT120I GGNCC 2 cut(s) 17, 344
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 277
BsaAI YACGTR 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 406
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 38
BspQI GCTCTTC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 36
BsrBI CCGCTC 1 cut(s) 34
BssMI GATC 1 cut(s) 76
BssSI CACGAG 1 cut(s) 258
Bst2BI CACGAG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 348
Bst6I CTCTTC 3 cut(s) 234, 294, 306
BstBAI YACGTR 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 411
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstV2I GAAGAC 1 cut(s) 358
CfoI GCGC 1 cut(s) 132
Cfr13I GGNCC 2 cut(s) 17, 344
Csp6I GTAC 1 cut(s) 37
CviAII CATG 2 cut(s) 98, 332
CviJI RGCY 1 cut(s) 227
CviKI_1 RGCY 1 cut(s) 227
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 1 cut(s) 411
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eam1104I CTCTTC 3 cut(s) 234, 294, 306
EarI CTCTTC 3 cut(s) 234, 294, 306
Eco47I GGWCC 2 cut(s) 17, 344
EcoRII CCWGG 1 cut(s) 346
EcoT22I ATGCAT 1 cut(s) 406
FaeI CATG 2 cut(s) 101, 335
FatI CATG 2 cut(s) 97, 331
FspBI CTAG 1 cut(s) 306
GlaI GCGC 1 cut(s) 131
HhaI GCGC 1 cut(s) 132
Hin1II CATG 2 cut(s) 101, 335
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HphI GGTGA 2 cut(s) 41, 74
Hpy166II GTNNAC 1 cut(s) 72
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 101, 380, 386, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 411
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 2 cut(s) 101, 335
HspAI GCGC 1 cut(s) 130
KpnI GGTACC 1 cut(s) 40
Kzo9I GATC 1 cut(s) 76
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 2 cut(s) 333, 360
MaeI CTAG 1 cut(s) 306
MaeII ACGT 1 cut(s) 169
MalI GATC 1 cut(s) 78
MbiI CCGCTC 1 cut(s) 34
MboI GATC 1 cut(s) 76
MboII GAAGA 8 cut(s) 99, 160, 163, 221, 258, 311, 323, 363
MfeI CAATTG 1 cut(s) 381
MluCI AATT 2 cut(s) 286, 381
MnlI CCTC 4 cut(s) 53, 189, 313, 358
Mph1103I ATGCAT 1 cut(s) 406
MseI TTAA 2 cut(s) 204, 371
MslI CAYNNNNRTG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 348
MunI CAATTG 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 1 cut(s) 76
NlaIII CATG 2 cut(s) 101, 335
NlaIV GGNNCC 1 cut(s) 38
NsiI ATGCAT 1 cut(s) 406
PciSI GCTCTTC 1 cut(s) 234
PctI GAATGC 1 cut(s) 406
PfoI TCCNGGA 1 cut(s) 346
Ppu21I YACGTR 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 2 cut(s) 17, 344
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 117
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 2 cut(s) 204, 371
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 2 cut(s) 17, 344
ScrFI CCNGG 1 cut(s) 348
SetI ASST 6 cut(s) 10, 31, 45, 64, 172, 369
SinI GGWCC 2 cut(s) 17, 344
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
SpeI ACTAGT 1 cut(s) 305
Sse9I AATT 2 cut(s) 286, 381
SsiI CCGC 1 cut(s) 34
SspI AATATT 1 cut(s) 90
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 346
TaiI ACGT 1 cut(s) 172
TasI AATT 2 cut(s) 286, 381
Tru1I TTAA 2 cut(s) 204, 371
Tru9I TTAA 2 cut(s) 204, 371
TspDTI ATGAA 6 cut(s) 17, 207, 221, 291, 342, 413
TspGWI ACGGA 1 cut(s) 44
VpaK11BI GGWCC 2 cut(s) 17, 344
XspI CTAG 1 cut(s) 306
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.