RchiOBHm_Chr4g0419691
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000469
Physical Location & Seq
Forward (+)
45210902 .. 45211253
352 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38955

Sequence Viewer

Length: 192 bp
ATGGCTCTTCATAATTACATAAGAAGATATGCTCAACGAGATATTGATTTTGATGAAAGTGGAAATTATTCAAGTGAAGAGACTAGTGAAGAGATGGAGGATAATGAACATGATGGAGATGGTCCAGGAAGACAAGAAATAGAGGTGTTAAGAAATGCAATTGCACAAAGTCTAATGAATGCATCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

63

Amino Acids

7.21

Weight (kDa)

4.25

Isoelectric Point (pI)

79.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 72
AhlI ACTAGT 1 cut(s) 83
AjnI CCWGG 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 74
Asp700I GAANNNNTTC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 122
AvaII GGWCC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 136
BccI CCATC 3 cut(s) 88, 107, 113
BciT130I CCWGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 74
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 136
BseBI CCWGG 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 74
BsmI GAATGC 1 cut(s) 184
BspQI GCTCTTC 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 126
Bst6I CTCTTC 3 cut(s) 12, 72, 84
BstDEI CTNAG 1 cut(s) 189
BstMAI GTCTC 1 cut(s) 74
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 122
CviAII CATG 1 cut(s) 110
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DdeI CTNAG 1 cut(s) 189
Eam1104I CTCTTC 3 cut(s) 12, 72, 84
EarI CTCTTC 3 cut(s) 12, 72, 84
Eco47I GGWCC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 124
EcoT22I ATGCAT 1 cut(s) 184
FaeI CATG 1 cut(s) 113
FaiI YATR 4 cut(s) 12, 20, 30, 111
FatI CATG 1 cut(s) 109
FspBI CTAG 1 cut(s) 84
FspEI CC 8 cut(s) 45, 80, 83, 99, 105, 111, 128, 138
Hin1II CATG 1 cut(s) 113
HpyCH4V TGCA 3 cut(s) 158, 164, 182
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 1 cut(s) 113
LguI GCTCTTC 1 cut(s) 12
LpnPI CCDG 2 cut(s) 111, 138
MaeI CTAG 1 cut(s) 84
MboII GAAGA 4 cut(s) 36, 89, 101, 141
MfeI CAATTG 1 cut(s) 159
MluCI AATT 3 cut(s) 13, 64, 159
MnlI CCTC 2 cut(s) 91, 136
Mph1103I ATGCAT 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 67
MseI TTAA 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 184
MvaI CCWGG 1 cut(s) 126
NlaIII CATG 1 cut(s) 113
NsiI ATGCAT 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 12
PctI GAATGC 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 67
PfoI TCCNGGA 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspPI GGNCC 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 149
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 126
SetI ASST 1 cut(s) 147
SgeI CNNG 7 cut(s) 50, 84, 96, 122, 137, 138, 146
SinI GGWCC 1 cut(s) 122
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 3 cut(s) 13, 64, 159
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 124
TasI AATT 3 cut(s) 13, 64, 159
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TspDTI ATGAA 3 cut(s) 69, 120, 191
VpaK11BI GGWCC 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 67
XspI CTAG 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.