FvH4_6g53026
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000469
Physical Location & Seq
Forward (+)
38939415 .. 38940297
883 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53026.t1

Sequence Viewer

Length: 480 bp
ATGGACACAAGATACATGCCTCATTTTAAGGATTGTGTTGGCGCAATTGATGGTGTTCATATTCAAGCTATTATTTCTCCATATGATCAAGTGCCGTATATCGGCACTGCCCATGATAGTAGAGTATTCTTATCGGCCATGCGCAACCCTCTAGCAAATTTTCCCAAACCCCCAAATGGAAAGTACTATGTGGTAGATGCCGGGTATCCACAAATGAGAGGTTATTTAGGACCGTATAAAGGTGAGAGCTTTCCTTATGAAAAACAAGTGAAGATAGTTGTTGCTACAATGGCTCTTCATAACTACATAAGAAAGTATGCTCACCAAGATCACGATTTTGATGAAAGTGATGATTTCCAAAGTGAAGAGATTAGTGAAGATATGGAGGATAATAAACATGAAGAAGATGGGATGGGAAGACAAGAAATGGAGGTGTTAAGAAACACCATTGCACAAAGTTTAATGAATGCATCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

160

Amino Acids

18.23

Weight (kDa)

5.02

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 157
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 3 cut(s) 101, 176, 239
AgsI TTSAA 1 cut(s) 65
AluBI AGCT 2 cut(s) 68, 249
AluI AGCT 2 cut(s) 68, 249
AoxI GGCC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 157
AspLEI GCGC 2 cut(s) 44, 144
AspS9I GGNCC 1 cut(s) 230
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 2 cut(s) 254, 314
AvaII GGWCC 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 424
BccI CCATC 3 cut(s) 44, 401, 406
BceAI ACGGC 1 cut(s) 79
BciVI GTATCC 1 cut(s) 216
BclI TGATCA 1 cut(s) 85
BcnI CCSGG 1 cut(s) 202
BfaI CTAG 1 cut(s) 152
BfuI GTATCC 1 cut(s) 216
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 202
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 202
BmsI GCATC 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 424
BpuMI CCSGG 1 cut(s) 202
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 176, 239
Bse3DI GCAATG 1 cut(s) 447
BseGI GGATG 1 cut(s) 417
BseLI CCNNNNNNNGG 3 cut(s) 101, 176, 239
BseMI GCAATG 1 cut(s) 447
BshFI GGCC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 3 cut(s) 101, 176, 239
BsmI GAATGC 1 cut(s) 472
BsnI GGCC 1 cut(s) 137
Bsp143I GATC 2 cut(s) 85, 328
BspANI GGCC 1 cut(s) 137
BspQI GCTCTTC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 447
BssMI GATC 2 cut(s) 85, 328
Bst4CI ACNGT 1 cut(s) 234
Bst6I CTCTTC 2 cut(s) 300, 360
BstF5I GGATG 1 cut(s) 417
BstHHI GCGC 2 cut(s) 44, 144
BstKTI GATC 2 cut(s) 88, 331
BstMBI GATC 2 cut(s) 85, 328
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 424
BsuI GTATCC 1 cut(s) 216
BsuRI GGCC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 417
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
CfoI GCGC 2 cut(s) 44, 144
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 184
CviAII CATG 4 cut(s) 16, 113, 139, 398
CviJI RGCY 4 cut(s) 68, 137, 249, 293
CviKI_1 RGCY 4 cut(s) 68, 137, 249, 293
CviQI GTAC 1 cut(s) 184
DpnI GATC 2 cut(s) 87, 330
DpnII GATC 2 cut(s) 85, 328
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 300, 360
EarI CTCTTC 2 cut(s) 300, 360
Eco47I GGWCC 1 cut(s) 230
EcoT22I ATGCAT 1 cut(s) 472
FaeI CATG 4 cut(s) 19, 116, 142, 401
FatI CATG 4 cut(s) 15, 112, 138, 397
FauNDI CATATG 1 cut(s) 82
FbaI TGATCA 1 cut(s) 85
FokI GGATG 1 cut(s) 424
FspBI CTAG 1 cut(s) 152
FspI TGCGCA 1 cut(s) 143
GlaI GCGC 2 cut(s) 43, 143
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 201
HhaI GCGC 2 cut(s) 44, 144
Hin1II CATG 4 cut(s) 19, 116, 142, 401
Hin6I GCGC 2 cut(s) 42, 142
HinP1I GCGC 2 cut(s) 42, 142
HpaII CCGG 1 cut(s) 201
HphI GGTGA 2 cut(s) 254, 314
Hpy188III TCNNGA 1 cut(s) 332
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 452, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
Hsp92II CATG 4 cut(s) 19, 116, 142, 401
HspAI GCGC 2 cut(s) 42, 142
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 85, 328
LguI GCTCTTC 1 cut(s) 300
LpnPI CCDG 1 cut(s) 214
LweI GCATC 1 cut(s) 187
MaeI CTAG 1 cut(s) 152
MalI GATC 2 cut(s) 87, 330
MboI GATC 2 cut(s) 85, 328
MboII GAAGA 7 cut(s) 283, 287, 377, 389, 413, 416, 429
MfeI CAATTG 1 cut(s) 45
MluCI AATT 2 cut(s) 45, 157
MnlI CCTC 5 cut(s) 30, 159, 212, 379, 424
Mph1103I ATGCAT 1 cut(s) 472
MseI TTAA 3 cut(s) 27, 437, 461
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 202
MunI CAATTG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 472
MwoI GCNNNNNNNGC 1 cut(s) 290
NciI CCSGG 1 cut(s) 202
NdeI CATATG 1 cut(s) 82
NdeII GATC 2 cut(s) 85, 328
NlaIII CATG 4 cut(s) 19, 116, 142, 401
NsbI TGCGCA 1 cut(s) 143
NsiI ATGCAT 1 cut(s) 472
NspI RCATGY 1 cut(s) 19
PciSI GCTCTTC 1 cut(s) 300
PctI GAATGC 1 cut(s) 472
PspPI GGNCC 1 cut(s) 230
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SapI GCTCTTC 1 cut(s) 300
SaqAI TTAA 3 cut(s) 27, 437, 461
Sau3AI GATC 2 cut(s) 85, 328
Sau96I GGNCC 1 cut(s) 230
ScaI AGTACT 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 202
SetI ASST 5 cut(s) 70, 223, 244, 251, 435
SfaNI GCATC 1 cut(s) 187
SinI GGWCC 1 cut(s) 230
Sse9I AATT 2 cut(s) 45, 157
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 234
TasI AATT 2 cut(s) 45, 157
TatI WGTACW 1 cut(s) 183
Tru1I TTAA 3 cut(s) 27, 437, 461
Tru9I TTAA 3 cut(s) 27, 437, 461
TscAI CASTG 1 cut(s) 112
TspDTI ATGAA 6 cut(s) 47, 273, 287, 357, 414, 479
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 1 cut(s) 157
XceI RCATGY 1 cut(s) 19
XspI CTAG 1 cut(s) 152
ZrmI AGTACT 1 cut(s) 185
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.