FvH4_2g13361
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000469
Physical Location & Seq
Reverse (-)
11670549 .. 11671707
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13361.t1

Sequence Viewer

Length: 888 bp
ATGTTTTTGTACACTTTAGGAGGAGGTGAAGCAAACAGAAGTGTACAAGAGCGATTTCAACACTCTGGTGAGACAGTTAGTAGATACTTCAATAAAATGCTCAATGTGATATGTGATGTCATGGCAAAAGATTTCATCAAGCCATCAGATCCCGAGTTCAAAAGCACTCCACCTGAAATACTTGGTGATTCTAGATATATGCCTCACTTTAAGGATTGTATTGGAGCTATAGATGGCGTGCATGTTCATGCAACTATATCACCATCAGATCAAGTACCATACATTGGCAGAAAAGGAATACCGACTCAGAATATAATGGCAGTATGCAACTTTGACATGCAATTTACATTTGCATGTGCAGGTTGGGAAGGCACTACCCACGATGCAAGAATATTCCAATCAGTAATTCACAATCCGGCTTTGAACTTTCCTAAACCTCCAAGTGGAAAATACTATTTGGTGGATGCAGGATACCCACAAATGAAAGAGTATTTGGGACCATACAAGTGTCAAAGGTATCATCTTCCTGAATTTCGCAGAGGTGCTCAACCAACAGGTTATAAAGAGGTATTTAATCATGCACACTCTTCCCTCAGGGGCGTTATTGAACGCACTTTTGGTGTGTGGAAAAAAAGATGGAATATTTTACGGGACATGCCAAGTTACTCATTTGATAAGCAAGTTAAAATTGTTATAGCAACAATGACATTTCACAACTATATAAGAAGGTATGCCGTACGTGATTTAGTTTTTGATGAAAGTGAAACCTTTGATGACATTGAAGAGGATGGGAGAGAGGATGATGCACGTGGTCACGGTCATGTTTCTAGAGAGATGGAGGCATTGAGAAATAGGATTGGTTCAAGTTTGATGGGTGCACAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

296

Amino Acids

33.81

Weight (kDa)

7.2

Isoelectric Point (pI)

55.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 1 - 38 4.2e-13 Domain of unknown function (DUF8040)
DDE_Tnp_1 PF01609 70 - 233 1.4e-11 Transposase DDE domain
DDE_Tnp_4 PF13359 77 - 239 3e-23 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 561
Acc36I ACCTGC 1 cut(s) 350
AccB7I CCANNNNNTGG 1 cut(s) 284
AclWI GGATC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 530
AcvI CACGTG 1 cut(s) 809
AfaI GTAC 4 cut(s) 11, 45, 276, 738
AfiI CCNNNNNNNGG 2 cut(s) 284, 443
AgsI TTSAA 7 cut(s) 59, 91, 160, 424, 608, 782, 864
AjuI GAANNNNNNNTTGG 6 cut(s) 390, 422, 476, 508, 600, 632
AleI CACNNNNGTG 1 cut(s) 66
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw21I GWGCWC 2 cut(s) 547, 880
Alw26I GTCTC 1 cut(s) 65
Alw44I GTGCAC 1 cut(s) 876
AlwI GGATC 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 152
ApaLI GTGCAC 1 cut(s) 876
ApoI RAATTY 1 cut(s) 530
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 4 cut(s) 38, 80, 197, 252
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 497
AxyI CCTNAGG 1 cut(s) 593
BaeGI GKGCMC 1 cut(s) 880
BbrPI CACGTG 1 cut(s) 809
Bbv12I GWGCWC 2 cut(s) 547, 880
BccI CCATC 7 cut(s) 151, 227, 271, 630, 782, 829, 865
BceAI ACGGC 1 cut(s) 719
BciVI GTATCC 1 cut(s) 464
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 2 cut(s) 192, 828
BfmI CTRYAG 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 350
BfuI GTATCC 1 cut(s) 464
Bme18I GGWCC 1 cut(s) 497
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 497
BmiI GGNNCC 1 cut(s) 498
BmsI GCATC 3 cut(s) 373, 454, 793
BsaAI YACGTR 2 cut(s) 740, 809
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 443
Bse21I CCTNAGG 1 cut(s) 593
BseGI GGATG 3 cut(s) 469, 793, 805
BseLI CCNNNNNNNGG 2 cut(s) 284, 443
BseMII CTCAG 2 cut(s) 320, 607
BseRI GAGGAG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 880
BsgI GTGCAG 1 cut(s) 378
BsiHKAI GWGCWC 2 cut(s) 547, 880
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 416
BsiWI CGTACG 1 cut(s) 736
BslFI GGGAC 2 cut(s) 510, 665
BslI CCNNNNNNNGG 2 cut(s) 284, 443
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 2 cut(s) 510, 665
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 547, 880
Bsp1407I TGTACA 2 cut(s) 9, 43
Bsp143I GATC 2 cut(s) 148, 268
BspCNI CTCAG 2 cut(s) 319, 606
BspLI GGNNCC 1 cut(s) 498
BspMI ACCTGC 1 cut(s) 350
BspPI GGATC 1 cut(s) 143
BsrGI TGTACA 2 cut(s) 9, 43
BssMI GATC 2 cut(s) 148, 268
Bst4CI ACNGT 2 cut(s) 76, 818
Bst6I CTCTTC 2 cut(s) 592, 777
BstAUI TGTACA 2 cut(s) 9, 43
BstBAI YACGTR 2 cut(s) 740, 809
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 306, 593
BstF5I GGATG 3 cut(s) 469, 793, 805
BstKTI GATC 2 cut(s) 151, 271
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 2 cut(s) 148, 268
BstNSI RCATGY 4 cut(s) 245, 340, 357, 658
BstSFI CTRYAG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 880
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
Bsu36I CCTNAGG 1 cut(s) 593
BsuI GTATCC 1 cut(s) 464
BtsCI GGATG 3 cut(s) 469, 793, 805
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 497
Csp6I GTAC 4 cut(s) 10, 44, 275, 737
CviAII CATG 8 cut(s) 121, 242, 248, 337, 354, 578, 655, 821
CviJI RGCY 3 cut(s) 142, 227, 419
CviKI_1 RGCY 3 cut(s) 142, 227, 419
CviQI GTAC 4 cut(s) 10, 44, 275, 737
DdeI CTNAG 2 cut(s) 306, 593
DpnI GATC 2 cut(s) 150, 270
DpnII GATC 2 cut(s) 148, 268
Eam1104I CTCTTC 2 cut(s) 592, 777
EarI CTCTTC 2 cut(s) 592, 777
Eco47I GGWCC 1 cut(s) 497
Eco72I CACGTG 1 cut(s) 809
Eco81I CCTNAGG 1 cut(s) 593
Eco88I CYCGRG 1 cut(s) 152
FaeI CATG 8 cut(s) 124, 245, 251, 340, 357, 581, 658, 824
FaqI GGGAC 2 cut(s) 510, 665
FatI CATG 8 cut(s) 120, 241, 247, 336, 353, 577, 654, 820
FokI GGATG 3 cut(s) 476, 800, 812
FspBI CTAG 2 cut(s) 192, 828
HapII CCGG 1 cut(s) 416
Hin1II CATG 8 cut(s) 124, 245, 251, 340, 357, 581, 658, 824
HinfI GANTC 2 cut(s) 188, 304
HpaII CCGG 1 cut(s) 416
HphI GGTGA 4 cut(s) 38, 80, 197, 252
Hpy166II GTNNAC 3 cut(s) 12, 44, 878
Hpy188I TCNGA 3 cut(s) 148, 268, 309
Hpy188III TCNNGA 4 cut(s) 152, 192, 527, 828
Hpy8I GTNNAC 3 cut(s) 12, 44, 878
HpyAV CCTTC 2 cut(s) 362, 720
HpyCH4III ACNGT 2 cut(s) 76, 818
HpyCH4IV ACGT 2 cut(s) 739, 808
HpyF3I CTNAG 2 cut(s) 306, 593
HpySE526I ACGT 2 cut(s) 739, 808
Hsp92II CATG 8 cut(s) 124, 245, 251, 340, 357, 581, 658, 824
Kzo9I GATC 2 cut(s) 148, 268
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 9 cut(s) 51, 186, 345, 429, 453, 540, 540, 580, 866
LweI GCATC 3 cut(s) 373, 454, 793
MaeI CTAG 2 cut(s) 192, 828
MaeII ACGT 2 cut(s) 739, 808
MaeIII GTNAC 2 cut(s) 662, 812
MalI GATC 2 cut(s) 150, 270
MboI GATC 2 cut(s) 148, 268
MboII GAAGA 3 cut(s) 515, 579, 794
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 2 cut(s) 547, 880
MluCI AATT 4 cut(s) 341, 405, 530, 687
MlyI GAGTC 1 cut(s) 298
MseI TTAA 3 cut(s) 210, 573, 684
MslI CAYNNNNRTG 5 cut(s) 66, 246, 352, 505, 819
MspI CCGG 1 cut(s) 416
NdeII GATC 2 cut(s) 148, 268
NlaIII CATG 8 cut(s) 124, 245, 251, 340, 357, 581, 658, 824
NlaIV GGNNCC 1 cut(s) 498
NmuCI GTSAC 1 cut(s) 812
NspI RCATGY 4 cut(s) 245, 340, 357, 658
OliI CACNNNNGTG 1 cut(s) 66
PfeI GAWTC 1 cut(s) 188
Pfl23II CGTACG 1 cut(s) 736
PflMI CCANNNNNTGG 1 cut(s) 284
PleI GAGTC 1 cut(s) 298
PmaCI CACGTG 1 cut(s) 809
PmlI CACGTG 1 cut(s) 809
PpsI GAGTC 1 cut(s) 298
Ppu21I YACGTR 2 cut(s) 740, 809
PsiI TTATAA 1 cut(s) 561
PspCI CACGTG 1 cut(s) 809
PspLI CGTACG 1 cut(s) 736
PspN4I GGNNCC 1 cut(s) 498
PspPI GGNCC 1 cut(s) 497
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 4 cut(s) 11, 45, 276, 738
RsaNI GTAC 4 cut(s) 10, 44, 275, 737
RseI CAYNNNNRTG 5 cut(s) 66, 246, 352, 505, 819
SaqAI TTAA 3 cut(s) 210, 573, 684
Sau3AI GATC 2 cut(s) 148, 268
Sau96I GGNCC 1 cut(s) 497
SchI GAGTC 1 cut(s) 298
SduI GDGCHC 2 cut(s) 547, 880
SfaNI GCATC 3 cut(s) 373, 454, 793
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 1 cut(s) 497
SmiMI CAYNNNNRTG 5 cut(s) 66, 246, 352, 505, 819
Sse9I AATT 4 cut(s) 341, 405, 530, 687
SspI AATATT 2 cut(s) 393, 643
SspMI CTAG 2 cut(s) 192, 828
TaaI ACNGT 2 cut(s) 76, 818
TaiI ACGT 2 cut(s) 742, 811
TasI AATT 4 cut(s) 341, 405, 530, 687
TatI WGTACW 2 cut(s) 9, 43
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 3 cut(s) 210, 573, 684
Tru9I TTAA 3 cut(s) 210, 573, 684
TseFI GTSAC 1 cut(s) 812
Tsp45I GTSAC 1 cut(s) 812
TspDTI ATGAA 4 cut(s) 124, 236, 497, 771
Van91I CCANNNNNTGG 1 cut(s) 284
VneI GTGCAC 1 cut(s) 876
VpaK11BI GGWCC 1 cut(s) 497
XapI RAATTY 1 cut(s) 530
XbaI TCTAGA 2 cut(s) 191, 827
XceI RCATGY 4 cut(s) 245, 340, 357, 658
XspI CTAG 2 cut(s) 192, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.