FvH4_6g21671

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000560
Physical Location & Seq
Reverse (-)
15232516 .. 15234203
1688 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21671.t1

Sequence Viewer

Length: 576 bp
ATGGTGGCTCCTACAATGAAAGTGGACACCGACCCATTCCCCACAGTTACGATGAATATGATTAATGTGGGGGACCATCAGAAGCGTAGACATCAACGAGAAGTCGCTTTGGCTAGGAAGTTAGAGCATGCAAAACAAGATGAAGAACTCTGGAGTCTTGAGACACAGGAACACCGAAACGTGTCTCGTGGTAGGCAGGAGAAGGGAAGTCAACACCGACAACACAAGTACCAATATCAAGAGCAGAAGTGGAACAGAAGTTACTTGTCAAAGATGAGAAAAATGAAACCAGTTTTGTTCATGATGGATGAGCGCATTCACAAGCGAGAAATGGAATATGCAGCCAAGGTAAAGAAAGGTGATTTTCACATCGAGTCAAAGGAAGAGTTAGCCGGCATGGATGTGGATGACAATGCACCTGATCAACAAACCAATTTGTTAGGAACCGATGGCAAAGCCAAGCAGGTGTCCGTCCAAGATCAGTTTTGTATTGATGATGAGCAAATGATTAAGGTTGAAGAGCAAAAATTTGAGCCCGGTGAAACGAAAAATACGGAAGACTTGATGATACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

22.59

Weight (kDa)

6.26

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 454
Acc36I ACCTGC 1 cut(s) 454
AccI GTMKAC 1 cut(s) 88
AcsI RAATTY 1 cut(s) 527
AfaI GTAC 1 cut(s) 230
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 1 cut(s) 518
Alw26I GTCTC 2 cut(s) 155, 189
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 527
AseI ATTAAT 1 cut(s) 63
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 537
AsuHPI GGTGA 2 cut(s) 371, 551
AvaII GGWCC 1 cut(s) 73
BaeI ACNNNNGTAYC 2 cut(s) 212, 245
BanII GRGCYC 1 cut(s) 537
BauI CACGAG 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 564
BbvI GCAGC 1 cut(s) 353
BccI CCATC 3 cut(s) 84, 298, 443
BclI TGATCA 1 cut(s) 421
BcnI CCSGG 1 cut(s) 537
BcoDI GTCTC 2 cut(s) 155, 189
BfaI CTAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 454
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 537
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 3 cut(s) 9, 74, 445
BmrFI CCNGG 1 cut(s) 537
BpiI GAAGAC 1 cut(s) 564
BpmI CTGGAG 1 cut(s) 172
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 537
BsaJI CCNNGG 1 cut(s) 345
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 3 cut(s) 313, 406, 412
BseNI ACTGG 1 cut(s) 290
BseXI GCAGC 1 cut(s) 353
BsiSI CCGG 2 cut(s) 393, 537
BslFI GGGAC 1 cut(s) 86
BsmAI GTCTC 2 cut(s) 155, 189
BsmFI GGGAC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 537
Bsp143I GATC 2 cut(s) 421, 478
BspHI TCATGA 1 cut(s) 300
BspLI GGNNCC 3 cut(s) 9, 74, 445
BspMI ACCTGC 1 cut(s) 454
BspQI GCTCTTC 1 cut(s) 513
BsrFI RCCGGY 1 cut(s) 392
BsrI ACTGG 1 cut(s) 290
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 2 cut(s) 421, 478
BssSI CACGAG 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 345
Bst2BI CACGAG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 46, 573
Bst6I CTCTTC 2 cut(s) 378, 513
BstC8I GCNNGC 2 cut(s) 129, 394
BstF5I GGATG 3 cut(s) 313, 406, 412
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 2 cut(s) 424, 481
BstMAI GTCTC 2 cut(s) 155, 189
BstMBI GATC 2 cut(s) 421, 478
BstNSI RCATGY 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 535
BstV1I GCAGC 1 cut(s) 353
BstV2I GAAGAC 1 cut(s) 564
BtsCI GGATG 3 cut(s) 313, 406, 412
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 2 cut(s) 129, 394
CciI TCATGA 1 cut(s) 300
CfoI GCGC 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 229
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 3 cut(s) 128, 301, 397
CviJI RGCY 6 cut(s) 8, 113, 344, 392, 458, 535
CviKI_1 RGCY 6 cut(s) 8, 113, 344, 392, 458, 535
CviQI GTAC 1 cut(s) 229
DpnI GATC 2 cut(s) 423, 480
DpnII GATC 2 cut(s) 421, 478
Eam1104I CTCTTC 2 cut(s) 378, 513
EarI CTCTTC 2 cut(s) 378, 513
Eco130I CCWWGG 1 cut(s) 345
Eco24I GRGCYC 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 345
EcoT38I GRGCYC 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 3 cut(s) 131, 304, 400
FaiI YATR 5 cut(s) 59, 129, 302, 339, 398
FaqI GGGAC 1 cut(s) 86
FatI CATG 3 cut(s) 127, 300, 396
FbaI TGATCA 1 cut(s) 421
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 3 cut(s) 320, 413, 419
FriOI GRGCYC 1 cut(s) 537
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 314
GluI GCNGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 172
HapII CCGG 2 cut(s) 393, 537
HhaI GCGC 1 cut(s) 315
Hin1II CATG 3 cut(s) 131, 304, 400
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HincII GTYRAC 1 cut(s) 212
HindII GTYRAC 1 cut(s) 212
HinfI GANTC 2 cut(s) 154, 374
HpaII CCGG 2 cut(s) 393, 537
HphI GGTGA 2 cut(s) 371, 551
Hpy166II GTNNAC 3 cut(s) 25, 89, 212
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 4 cut(s) 151, 158, 239, 301
Hpy8I GTNNAC 3 cut(s) 25, 89, 212
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 2 cut(s) 46, 573
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 3 cut(s) 131, 341, 416
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 3 cut(s) 131, 304, 400
HspAI GCGC 1 cut(s) 313
KroI GCCGGC 1 cut(s) 392
KroNI GCCGGC 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 2 cut(s) 421, 478
LguI GCTCTTC 1 cut(s) 513
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 8 cut(s) 136, 152, 182, 303, 406, 432, 449, 550
Lsp1109I GCAGC 1 cut(s) 353
MaeI CTAG 1 cut(s) 114
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 46, 260
MalI GATC 2 cut(s) 423, 480
MboI GATC 2 cut(s) 421, 478
MboII GAAGA 4 cut(s) 155, 395, 530, 569
MhlI GDGCHC 1 cut(s) 537
MluCI AATT 2 cut(s) 433, 527
MlyI GAGTC 2 cut(s) 163, 383
MroNI GCCGGC 1 cut(s) 392
MseI TTAA 2 cut(s) 63, 510
MslI CAYNNNNRTG 1 cut(s) 401
MspI CCGG 2 cut(s) 393, 537
MspR9I CCNGG 1 cut(s) 537
Mva1269I GAATGC 1 cut(s) 315
NaeI GCCGGC 1 cut(s) 394
NciI CCSGG 1 cut(s) 537
NdeII GATC 2 cut(s) 421, 478
NgoMIV GCCGGC 1 cut(s) 392
NlaIII CATG 3 cut(s) 131, 304, 400
NlaIV GGNNCC 3 cut(s) 9, 74, 445
NspI RCATGY 1 cut(s) 131
PaeI GCATGC 1 cut(s) 131
PagI TCATGA 1 cut(s) 300
PaqCI CACCTGC 1 cut(s) 454
PciSI GCTCTTC 1 cut(s) 513
PctI GAATGC 1 cut(s) 315
PdiI GCCGGC 1 cut(s) 394
PkrI GCNGC 1 cut(s) 343
PleI GAGTC 2 cut(s) 162, 382
PpsI GAGTC 2 cut(s) 162, 382
PshBI ATTAAT 1 cut(s) 63
PspN4I GGNNCC 3 cut(s) 9, 74, 445
PspPI GGNCC 1 cut(s) 73
PsrI GAACNNNNNNTAC 2 cut(s) 245, 277
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 401
SapI GCTCTTC 1 cut(s) 513
SaqAI TTAA 2 cut(s) 63, 510
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 2 cut(s) 421, 478
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 2 cut(s) 163, 383
ScrFI CCNGG 1 cut(s) 537
SduI GDGCHC 1 cut(s) 537
SetI ASST 6 cut(s) 183, 351, 361, 421, 468, 516
SinI GGWCC 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SphI GCATGC 1 cut(s) 131
Sse9I AATT 2 cut(s) 433, 527
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 535
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 2 cut(s) 46, 573
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 372
TasI AATT 2 cut(s) 433, 527
Tru1I TTAA 2 cut(s) 63, 510
Tru9I TTAA 2 cut(s) 63, 510
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 5 cut(s) 32, 68, 156, 289, 299
TspGWI ACGGA 2 cut(s) 460, 569
VpaK11BI GGWCC 1 cut(s) 73
VspI ATTAAT 1 cut(s) 63
XapI RAATTY 1 cut(s) 527
XceI RCATGY 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 88
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.