Rh2BG180200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000560
Physical Location & Seq
Forward (+)
16026732 .. 16027211
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG180200.1

Sequence Viewer

Length: 480 bp
ATGAAACGATATCATAAGAAGCACTTAGCTATCAAGCTTTATGGTTTGCTTGAAGAGGAGGAAAGACTGTTTTTAGAATCATCTACGGATGAAGTCTTCTTGGCACAGCCCAGTATTAGCCGAGGTTTAAAAGCTACGTTCCAGGTAGCATGGGAAAGTTCATCTCCAACAGTCTGCACACCGGAGGATAGATCAGCCCTACCAGTGTCTGAGGAAGACTTTTTGTATTTAACAGAGTACCACTGGCGCTATTCAGCTGAGGAGTTATACGACCTTATTGAGGAAGAAGAAGAACTGGCAGATGCGTTTGATCGATACACCTCCCAGAAGAAGAGCGAGGCAGGGATAAAAGCCAAAGATAATTCCCGATCTGAGCAGGTGATGGTTGAAGTGCTGAGGAATAAATTGCCTCCTTTTTCAGCCAAAGATTGGACTACCATGAAGCAGTATCACAAGAAGTTGTCGGCCTTAGCTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.53

Weight (kDa)

5.22

Isoelectric Point (pI)

73.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 478
AarI CACCTGC 1 cut(s) 367
Acc36I ACCTGC 1 cut(s) 367
AccB7I CCANNNNNTGG 1 cut(s) 429
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 2 cut(s) 280, 429
AgsI TTSAA 2 cut(s) 53, 389
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 5 cut(s) 29, 37, 134, 257, 473
AluI AGCT 5 cut(s) 29, 37, 134, 257, 473
AlwNI CAGNNNCTG 1 cut(s) 209
AoxI GGCC 1 cut(s) 465
AspLEI GCGC 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 391
BbsI GAAGAC 2 cut(s) 88, 222
BbvCI CCTCAGC 2 cut(s) 258, 395
BccI CCATC 1 cut(s) 376
BciT130I CCWGG 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 250
BfuAI ACCTGC 1 cut(s) 367
Bme1390I CCNGG 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 143
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 105
BpiI GAAGAC 2 cut(s) 88, 222
Bpu10I CCTNAGC 3 cut(s) 258, 395, 469
Bsa29I ATCGAT 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 121
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 429
Bse1I ACTGG 4 cut(s) 111, 203, 248, 300
BseBI CCWGG 1 cut(s) 143
BseCI ATCGAT 1 cut(s) 313
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 2 cut(s) 280, 429
BseMII CTCAG 4 cut(s) 201, 249, 363, 386
BseNI ACTGG 4 cut(s) 111, 203, 248, 300
BseRI GAGGAG 2 cut(s) 71, 275
BsgI GTGCAG 1 cut(s) 160
BshFI GGCC 1 cut(s) 467
BshVI ATCGAT 1 cut(s) 313
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 2 cut(s) 280, 429
BsnI GGCC 1 cut(s) 467
Bsp143I GATC 3 cut(s) 191, 310, 368
BspANI GGCC 1 cut(s) 467
BspCNI CTCAG 4 cut(s) 202, 250, 364, 387
BspDI ATCGAT 1 cut(s) 313
BspMI ACCTGC 1 cut(s) 367
BspQI GCTCTTC 1 cut(s) 326
BsrI ACTGG 4 cut(s) 111, 203, 248, 300
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 3 cut(s) 191, 310, 368
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 69, 172
Bst6I CTCTTC 2 cut(s) 48, 326
BstDEI CTNAG 6 cut(s) 25, 210, 258, 372, 395, 469
BstENI CCTNNNNNAGG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 3 cut(s) 194, 313, 371
BstMBI GATC 3 cut(s) 191, 310, 368
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstV2I GAAGAC 2 cut(s) 88, 222
Bsu15I ATCGAT 1 cut(s) 313
BsuRI GGCC 1 cut(s) 467
BsuTUI ATCGAT 1 cut(s) 313
BtsCI GGATG 1 cut(s) 94
BtsIMutI CAGTG 2 cut(s) 210, 241
BveI ACCTGC 1 cut(s) 367
CaiI CAGNNNCTG 1 cut(s) 209
CfoI GCGC 1 cut(s) 249
ClaI ATCGAT 1 cut(s) 313
Csp6I GTAC 1 cut(s) 238
CviAII CATG 2 cut(s) 150, 439
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 6 cut(s) 25, 210, 258, 372, 395, 469
DpnI GATC 3 cut(s) 193, 312, 370
DpnII GATC 3 cut(s) 191, 310, 368
DraI TTTAAA 1 cut(s) 129
Eam1104I CTCTTC 2 cut(s) 48, 326
EarI CTCTTC 2 cut(s) 48, 326
Eco32I GATATC 1 cut(s) 11
EcoNI CCTNNNNNAGG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 141
EcoRV GATATC 1 cut(s) 11
FaeI CATG 2 cut(s) 153, 442
FaiI YATR 6 cut(s) 15, 42, 151, 268, 440, 478
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FatI CATG 2 cut(s) 149, 438
FokI GGATG 1 cut(s) 101
GlaI GCGC 1 cut(s) 248
HaeII RGCGCY 1 cut(s) 250
HaeIII GGCC 1 cut(s) 467
HapII CCGG 1 cut(s) 182
HhaI GCGC 1 cut(s) 249
Hin1II CATG 2 cut(s) 153, 442
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 391
Hpy188I TCNGA 2 cut(s) 211, 373
Hpy188III TCNNGA 1 cut(s) 366
HpyCH4III ACNGT 2 cut(s) 69, 172
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 177
HpyF3I CTNAG 6 cut(s) 25, 210, 258, 372, 395, 469
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 2 cut(s) 153, 442
HspAI GCGC 1 cut(s) 247
Kzo9I GATC 3 cut(s) 191, 310, 368
LguI GCTCTTC 1 cut(s) 326
LweI GCATC 1 cut(s) 292
MaeII ACGT 1 cut(s) 137
MalI GATC 3 cut(s) 193, 312, 370
MboI GATC 3 cut(s) 191, 310, 368
MboII GAAGA 8 cut(s) 65, 88, 227, 296, 299, 302, 340, 343
MluCI AATT 2 cut(s) 361, 404
MmeI TCCRAC 1 cut(s) 191
MseI TTAA 2 cut(s) 128, 230
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
NdeII GATC 3 cut(s) 191, 310, 368
NlaIII CATG 2 cut(s) 153, 442
NmeAIII GCCGAG 1 cut(s) 146
PaqCI CACCTGC 1 cut(s) 367
PciSI GCTCTTC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 429
PsiI TTATAA 1 cut(s) 478
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PstNI CAGNNNCTG 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SapI GCTCTTC 1 cut(s) 326
SaqAI TTAA 2 cut(s) 128, 230
Sau3AI GATC 3 cut(s) 191, 310, 368
ScrFI CCNGG 1 cut(s) 143
SfaNI GCATC 1 cut(s) 292
Sse9I AATT 2 cut(s) 361, 404
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 69, 172
TaiI ACGT 1 cut(s) 140
TaqI TCGA 1 cut(s) 313
TasI AATT 2 cut(s) 361, 404
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 2 cut(s) 128, 230
Tru9I TTAA 2 cut(s) 128, 230
TscAI CASTG 2 cut(s) 210, 248
TspDTI ATGAA 4 cut(s) 17, 105, 150, 455
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 2 cut(s) 210, 248
Van91I CCANNNNNTGG 1 cut(s) 429
XagI CCTNNNNNAGG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.