Rmu_sc0002489.1_g000053

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002489.1
OG0000560
Physical Location & Seq
Forward (+)
182095 .. 182376
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002489.1_g000053.1.cds

Sequence Viewer

Length: 282 bp
atggcatatgataataggtggtacggccggatgtctagaaaccagagtgtggcacccttgacgaaaacccagaagcacaggcaacaacgtgaacttgcttatgccaggaaggtagaagaggaagagggtgagcaacagaggctgagaaaggttcaagaacaaggtgaacgtgagaagtcccagttgagaaagggaagaaacaatcaaagacatgttggtatgacccttatgagcgaagtcgtgaatcaaatgaaagattgcaacattgacattgggatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

11.1

Weight (kDa)

9.83

Isoelectric Point (pI)

70.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 52
AccB7I CCANNNNNTGG 1 cut(s) 49
AcoI YGGCCR 1 cut(s) 25
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 49
AflIII ACRYGT 1 cut(s) 211
AgsI TTSAA 1 cut(s) 155
AjnI CCWGG 1 cut(s) 104
AlwNI CAGNNNCTG 1 cut(s) 142
AoxI GGCC 1 cut(s) 25
AsuHPI GGTGA 2 cut(s) 140, 176
BanI GGYRCC 1 cut(s) 52
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 106
BfaI CTAG 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 106
BmrI ACTGGG 1 cut(s) 175
BmuI ACTGGG 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 106
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 181
BseX3I CGGCCG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 28
BsiSI CCGG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 1 cut(s) 27
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 111, 117
BstDEI CTNAG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 36
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 104
BstZI CGGCCG 1 cut(s) 25
BsuRI GGCC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 36
CaiI CAGNNNCTG 1 cut(s) 142
Csp6I GTAC 1 cut(s) 22
CviAII CATG 1 cut(s) 212
CviJI RGCY 2 cut(s) 27, 142
CviKI_1 RGCY 2 cut(s) 27, 142
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 25
EagI CGGCCG 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 111, 117
EarI CTCTTC 2 cut(s) 111, 117
EclXI CGGCCG 1 cut(s) 25
Eco52I CGGCCG 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 104
FaeI CATG 1 cut(s) 215
FaiI YATR 6 cut(s) 7, 9, 102, 213, 221, 230
FaqI GGGAC 1 cut(s) 163
FatI CATG 1 cut(s) 211
FauNDI CATATG 1 cut(s) 7
FokI GGATG 1 cut(s) 43
FspBI CTAG 1 cut(s) 36
HaeIII GGCC 1 cut(s) 27
HapII CCGG 1 cut(s) 28
Hin1II CATG 1 cut(s) 215
HinfI GANTC 1 cut(s) 244
HpaII CCGG 1 cut(s) 28
HphI GGTGA 2 cut(s) 140, 176
Hpy166II GTNNAC 2 cut(s) 92, 167
Hpy188III TCNNGA 3 cut(s) 36, 155, 241
Hpy8I GTNNAC 2 cut(s) 92, 167
HpyAV CCTTC 1 cut(s) 103
HpyCH4IV ACGT 2 cut(s) 88, 169
HpyCH4V TGCA 1 cut(s) 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 2 cut(s) 88, 169
Hsp92II CATG 1 cut(s) 215
LpnPI CCDG 7 cut(s) 41, 56, 64, 83, 91, 118, 194
MaeI CTAG 1 cut(s) 36
MaeII ACGT 2 cut(s) 88, 169
MboII GAAGA 3 cut(s) 128, 134, 207
MnlI CCTC 3 cut(s) 112, 118, 132
MspI CCGG 1 cut(s) 28
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 139
NdeI CATATG 1 cut(s) 7
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 1 cut(s) 54
NspI RCATGY 1 cut(s) 215
PciI ACATGT 1 cut(s) 211
PfeI GAWTC 1 cut(s) 244
PflMI CCANNNNNTGG 1 cut(s) 49
PscI ACATGT 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 54
PstNI CAGNNNCTG 1 cut(s) 142
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 106
SetI ASST 6 cut(s) 20, 91, 114, 153, 166, 172
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 104
TaiI ACGT 2 cut(s) 91, 172
TfiI GAWTC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 266
Van91I CCANNNNNTGG 1 cut(s) 49
XbaI TCTAGA 1 cut(s) 35
XceI RCATGY 1 cut(s) 215
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.