Rh2BG340600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
45441410 .. 45441839
430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG340600.1

Sequence Viewer

Length: 231 bp
ATGGAAGAACGCATTCGCCAACGAGAACTTGAATATGCTGCAGAGCTCGGCAAGGGAGATTCTGATTTTGAGTTGGAAGAGGAACTAATCTCACTGGCCGCGGGGGAAGCTTCAATAGCCGCGACCATGATAAAGACCTCATTGGCCGCGGCGGAAGTTTCAATAGCCACGACAATGGTGAAGACCTCACCGGCCACTGTGAAGGAGGTGAGGTGGATGAAAGAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.35

Weight (kDa)

4.59

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 101, 122, 149
AciI CCGC 6 cut(s) 99, 101, 120, 147, 149, 152
AcoI YGGCCR 3 cut(s) 96, 144, 192
AgsI TTSAA 3 cut(s) 32, 114, 162
AluBI AGCT 2 cut(s) 46, 110
AluI AGCT 2 cut(s) 46, 110
Alw21I GWGCWC 1 cut(s) 48
AoxI GGCC 3 cut(s) 96, 144, 192
ApeKI GCWGC 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 12
AsuHPI GGTGA 3 cut(s) 180, 190, 220
BanII GRGCYC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 25
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 5 cut(s) 39, 99, 120, 147, 150
BlsI GCNGC 5 cut(s) 40, 100, 121, 148, 151
BpiI GAAGAC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 99, 147
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bse118I RCCGGY 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 99, 147
BseGI GGATG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 25
Bsh1236I CGCG 3 cut(s) 101, 122, 149
BshFI GGCC 3 cut(s) 98, 146, 194
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 191
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 3 cut(s) 98, 146, 194
Bsp1286I GDGCHC 1 cut(s) 48
BspACI CCGC 6 cut(s) 99, 101, 120, 147, 149, 152
BspANI GGCC 3 cut(s) 98, 146, 194
BspFNI CGCG 3 cut(s) 101, 122, 149
BspMAI CTGCAG 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 190
BsrI ACTGG 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 99, 147
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 72
BstDSI CCRYGG 2 cut(s) 99, 147
BstF5I GGATG 1 cut(s) 222
BstFNI CGCG 3 cut(s) 101, 122, 149
BstMWI GCNNNNNNNGC 2 cut(s) 107, 116
BstSFI CTRYAG 1 cut(s) 39
BstUI CGCG 3 cut(s) 101, 122, 149
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 188
BstXI CCANNNNNNTGG 1 cut(s) 175
BsuRI GGCC 3 cut(s) 98, 146, 194
BtgI CCRYGG 2 cut(s) 99, 147
BtsCI GGATG 1 cut(s) 222
BtsIMutI CAGTG 2 cut(s) 92, 195
Cfr10I RCCGGY 1 cut(s) 190
Cfr42I CCGCGG 2 cut(s) 102, 150
CviAII CATG 1 cut(s) 127
CviJI RGCY 7 cut(s) 46, 98, 110, 119, 146, 167, 194
CviKI_1 RGCY 7 cut(s) 46, 98, 110, 119, 146, 167, 194
EaeI YGGCCR 3 cut(s) 96, 144, 192
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
EciI GGCGGA 1 cut(s) 167
Ecl136II GAGCTC 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 1 cut(s) 130
FaiI YATR 2 cut(s) 36, 128
FatI CATG 1 cut(s) 126
FauI CCCGC 1 cut(s) 94
Fnu4HI GCNGC 5 cut(s) 39, 99, 120, 147, 150
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 5 cut(s) 39, 99, 120, 147, 150
GluI GCNGC 5 cut(s) 39, 99, 120, 147, 150
HaeIII GGCC 3 cut(s) 98, 146, 194
HapII CCGG 1 cut(s) 191
Hin1II CATG 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 108
HinfI GANTC 1 cut(s) 59
HpaII CCGG 1 cut(s) 191
HphI GGTGA 3 cut(s) 180, 190, 220
Hpy188I TCNGA 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 116
Hsp92II CATG 1 cut(s) 130
KspI CCGCGG 2 cut(s) 102, 150
LpnPI CCDG 2 cut(s) 80, 204
Lsp1109I GCAGC 1 cut(s) 25
MboII GAAGA 3 cut(s) 17, 89, 193
MhlI GDGCHC 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 5 cut(s) 73, 148, 196, 199, 204
MroXI GAANNNNTTC 1 cut(s) 12
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 2 cut(s) 101, 149
MspI CCGG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 12
MvnI CGCG 3 cut(s) 101, 122, 149
MwoI GCNNNNNNNGC 2 cut(s) 107, 116
NlaIII CATG 1 cut(s) 130
NmeAIII GCCGAG 1 cut(s) 27
PctI GAATGC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 5 cut(s) 40, 100, 121, 148, 151
Psp124BI GAGCTC 1 cut(s) 48
PstI CTGCAG 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 48
SacII CCGCGG 2 cut(s) 102, 150
SatI GCNGC 5 cut(s) 39, 99, 120, 147, 150
SduI GDGCHC 1 cut(s) 48
SetI ASST 6 cut(s) 48, 112, 140, 188, 210, 215
SfcI CTRYAG 1 cut(s) 39
Sfr303I CCGCGG 2 cut(s) 102, 150
SgrBI CCGCGG 2 cut(s) 102, 150
SmiMI CAYNNNNRTG 1 cut(s) 173
SsiI CCGC 6 cut(s) 99, 101, 120, 147, 149, 152
SstI GAGCTC 1 cut(s) 48
TaaI ACNGT 1 cut(s) 199
TauI GCSGC 4 cut(s) 101, 122, 149, 152
TfiI GAWTC 1 cut(s) 59
TscAI CASTG 2 cut(s) 99, 202
TseI GCWGC 1 cut(s) 38
TspRI CASTG 2 cut(s) 99, 202
XmnI GAANNNNTTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.