Rroxscaffold_3G00265790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000560
Physical Location & Seq
Reverse (-)
59185405 .. 59187141
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265790.1

Sequence Viewer

Length: 570 bp
ATGAATTGGGGACTCCCACGGCCAACTCGGCCGATCGGGATGAAGTACTTAAGCTTTTTGGCCCTCACGGTCCCCGAGGGACTTTATCGGGGACAACAAACTTCCCAAAGTGTTTTTAAGAGGATAAAGGAAAGCGAAAACGCCGAGAGCGGACGACTTTCGGTGAGGAGGAGGTTGACTTTTGAGGATGATGAGCTAGAGGGAAATTTTGCGACGGTTTCAATGGCCGACGACGATCGAGTTTTGACCAAGATGATCGATTTTATGACCAAGATTACTTTGCTAGAAATAGAGGCCGTAGATCTTATAGGACATATCGGCCACCGATTACTCATGACAACGGGAGAGACAGAGAAGGCGTCCACCAAGCCGACAACCGGGGCCATTGAAGAATTGAAGAAAGAGCAAGCCGGTCTCGGTCGGCGGCTAAAGGATGAGGAAATGGTAGAAGGTGTTGCCACGAACAATGGTAAGCAAGACGATTTTGAAGATGAGGGTGATGAGGAAGTCGATTATGGGGAAGAAGAGGAACAAGGTGACTATGATAATGAAGGCTGGAATCGACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.41

Weight (kDa)

4.56

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 150
AciI CCGC 2 cut(s) 150, 424
AcoI YGGCCR 4 cut(s) 20, 29, 225, 319
AcsI RAATTY 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 359
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 377
AflII CTTAAG 1 cut(s) 49
AgsI TTSAA 4 cut(s) 222, 389, 397, 488
AluBI AGCT 2 cut(s) 54, 196
AluI AGCT 2 cut(s) 54, 196
Alw26I GTCTC 2 cut(s) 341, 419
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 7 cut(s) 20, 29, 60, 225, 294, 319, 381
ApoI RAATTY 1 cut(s) 205
AspS9I GGNCC 3 cut(s) 61, 70, 381
AsuC2I CCSGG 1 cut(s) 379
AsuHPI GGTGA 3 cut(s) 175, 509, 548
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 70
BceAI ACGGC 2 cut(s) 35, 281
BcnI CCSGG 1 cut(s) 379
BcoDI GTCTC 2 cut(s) 341, 419
BfaI CTAG 2 cut(s) 197, 284
BfrI CTTAAG 1 cut(s) 49
BglI GCCNNNNNGGC 1 cut(s) 28
BglII AGATCT 1 cut(s) 301
BisI GCNGC 1 cut(s) 425
BlsI GCNGC 1 cut(s) 426
BmcAI AGTACT 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 379
Bme18I GGWCC 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 3 cut(s) 61, 70, 381
BmiI GGNNCC 2 cut(s) 72, 382
BmrFI CCNGG 1 cut(s) 379
BpuMI CCSGG 1 cut(s) 379
Bsa29I ATCGAT 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 3 cut(s) 17, 75, 378
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse118I RCCGGY 1 cut(s) 410
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 3 cut(s) 17, 75, 378
BseGI GGATG 3 cut(s) 45, 193, 439
BseLI CCNNNNNNNGG 1 cut(s) 377
BseRI GAGGAG 2 cut(s) 181, 184
BseX3I CGGCCG 1 cut(s) 29
Bsh1285I CGRYCG 4 cut(s) 32, 36, 238, 421
BshFI GGCC 7 cut(s) 22, 31, 62, 227, 296, 321, 383
BshVI ATCGAT 1 cut(s) 258
BsiEI CGRYCG 4 cut(s) 32, 36, 238, 421
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 2 cut(s) 378, 411
BslFI GGGAC 4 cut(s) 24, 56, 93, 105
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 2 cut(s) 341, 419
BsmFI GGGAC 4 cut(s) 24, 56, 93, 105
BsnI GGCC 7 cut(s) 22, 31, 62, 227, 296, 321, 383
Bso31I GGTCTC 1 cut(s) 419
BsoBI CYCGRG 1 cut(s) 74
Bsp143I GATC 4 cut(s) 33, 235, 255, 301
BspACI CCGC 2 cut(s) 150, 424
BspANI GGCC 7 cut(s) 22, 31, 62, 227, 296, 321, 383
BspDI ATCGAT 1 cut(s) 258
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 2 cut(s) 72, 382
BspTI CTTAAG 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 419
BsrBI CCGCTC 1 cut(s) 150
BsrFI RCCGGY 1 cut(s) 410
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 3 cut(s) 17, 75, 378
BssMI GATC 4 cut(s) 33, 235, 255, 301
BssNI GRCGYC 1 cut(s) 359
Bst4CI ACNGT 2 cut(s) 70, 217
Bst6I CTCTTC 1 cut(s) 519
BstACI GRCGYC 1 cut(s) 359
BstAFI CTTAAG 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 408
BstDSI CCRYGG 1 cut(s) 17
BstF5I GGATG 3 cut(s) 45, 193, 439
BstKTI GATC 4 cut(s) 36, 238, 258, 304
BstMAI GTCTC 2 cut(s) 341, 419
BstMBI GATC 4 cut(s) 33, 235, 255, 301
BstMCI CGRYCG 4 cut(s) 32, 36, 238, 421
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 377
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BstZI CGGCCG 1 cut(s) 29
Bsu15I ATCGAT 1 cut(s) 258
BsuRI GGCC 7 cut(s) 22, 31, 62, 227, 296, 321, 383
BsuTUI ATCGAT 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 3 cut(s) 45, 193, 439
Cac8I GCNNGC 1 cut(s) 408
CciI TCATGA 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 410
Cfr13I GGNCC 3 cut(s) 61, 70, 381
ClaI ATCGAT 1 cut(s) 258
CseI GACGC 1 cut(s) 348
Csp6I GTAC 1 cut(s) 46
CviAII CATG 1 cut(s) 334
CviQI GTAC 1 cut(s) 46
DpnI GATC 4 cut(s) 35, 237, 257, 303
DpnII GATC 4 cut(s) 33, 235, 255, 301
EaeI YGGCCR 4 cut(s) 20, 29, 225, 319
EagI CGGCCG 1 cut(s) 29
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
EclXI CGGCCG 1 cut(s) 29
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 70
Eco52I CGGCCG 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 74
FaeI CATG 1 cut(s) 337
FaiI YATR 7 cut(s) 266, 308, 315, 335, 516, 543, 568
FaqI GGGAC 4 cut(s) 24, 56, 93, 105
FatI CATG 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 425
FokI GGATG 3 cut(s) 52, 200, 446
Fsp4HI GCNGC 1 cut(s) 425
FspBI CTAG 2 cut(s) 197, 284
GluI GCNGC 1 cut(s) 425
HaeIII GGCC 7 cut(s) 22, 31, 62, 227, 296, 321, 383
HapII CCGG 2 cut(s) 378, 411
HgaI GACGC 1 cut(s) 348
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 1 cut(s) 337
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 2 cut(s) 12, 559
HpaII CCGG 2 cut(s) 378, 411
HphI GGTGA 3 cut(s) 175, 509, 548
Hpy166II GTNNAC 2 cut(s) 177, 363
Hpy188III TCNNGA 2 cut(s) 37, 334
Hpy8I GTNNAC 2 cut(s) 177, 363
Hpy99I CGWCG 3 cut(s) 217, 233, 236
HpyAV CCTTC 3 cut(s) 349, 443, 545
HpyCH4III ACNGT 2 cut(s) 70, 217
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 1 cut(s) 337
Kzo9I GATC 4 cut(s) 33, 235, 255, 301
LpnPI CCDG 3 cut(s) 391, 424, 541
MaeI CTAG 2 cut(s) 197, 284
MaeIII GTNAC 1 cut(s) 536
MalI GATC 4 cut(s) 35, 237, 257, 303
MbiI CCGCTC 1 cut(s) 150
MboI GATC 4 cut(s) 33, 235, 255, 301
MboII GAAGA 5 cut(s) 401, 409, 500, 533, 536
MflI RGATCY 1 cut(s) 301
MluCI AATT 3 cut(s) 4, 205, 392
MlyI GAGTC 1 cut(s) 6
MseI TTAA 2 cut(s) 50, 117
MspCI CTTAAG 1 cut(s) 49
MspI CCGG 2 cut(s) 378, 411
MspR9I CCNGG 1 cut(s) 379
MwoI GCNNNNNNNGC 1 cut(s) 28
NciI CCSGG 1 cut(s) 379
NdeII GATC 4 cut(s) 33, 235, 255, 301
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 2 cut(s) 72, 382
NmeAIII GCCGAG 2 cut(s) 7, 169
NmuCI GTSAC 1 cut(s) 536
PagI TCATGA 1 cut(s) 333
PfeI GAWTC 1 cut(s) 559
PkrI GCNGC 1 cut(s) 426
Ple19I CGATCG 2 cut(s) 36, 238
PleI GAGTC 1 cut(s) 6
PpsI GAGTC 1 cut(s) 6
PspN4I GGNNCC 2 cut(s) 72, 382
PspPI GGNCC 3 cut(s) 61, 70, 381
PsuI RGATCY 1 cut(s) 301
PvuI CGATCG 2 cut(s) 36, 238
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 2 cut(s) 50, 117
SatI GCNGC 1 cut(s) 425
Sau3AI GATC 4 cut(s) 33, 235, 255, 301
Sau96I GGNCC 3 cut(s) 61, 70, 381
ScaI AGTACT 1 cut(s) 47
SchI GAGTC 1 cut(s) 6
ScrFI CCNGG 1 cut(s) 379
SetI ASST 5 cut(s) 56, 176, 198, 454, 538
SfiI GGCCNNNNNGGCC 1 cut(s) 28
SinI GGWCC 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 3 cut(s) 4, 205, 392
SsiI CCGC 2 cut(s) 150, 424
SspMI CTAG 2 cut(s) 197, 284
StyD4I CCNGG 1 cut(s) 377
TaaI ACNGT 2 cut(s) 70, 217
TaqI TCGA 4 cut(s) 238, 258, 510, 562
TaqII GACCGA 1 cut(s) 407
TasI AATT 3 cut(s) 4, 205, 392
TatI WGTACW 1 cut(s) 45
TauI GCSGC 1 cut(s) 427
TfiI GAWTC 1 cut(s) 559
Tru1I TTAA 2 cut(s) 50, 117
Tru9I TTAA 2 cut(s) 50, 117
TseFI GTSAC 1 cut(s) 536
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 3 cut(s) 17, 56, 564
Vha464I CTTAAG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 1 cut(s) 205
XspI CTAG 2 cut(s) 197, 284
ZrmI AGTACT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.