Rroxscaffold_2G00079850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000560
Physical Location & Seq
Reverse (-)
2802571 .. 2803777
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00079850.1

Sequence Viewer

Length: 405 bp
ATGGAACTTGAGACCATCGGTGATCATTTTGAAAATGTCCTTAGCTTCCCAAAGCTACCCCATCTCGCGTTTCTCGAAGGAGGGGTTAAGTGCGAGATTTATGGATTCACGTCCGCCGAGAGCAAATTACTAGATAATTTGTCCAAATACCTGCGGACTCGTGCAATCGAGTGGCAAGTAGAGACAGAGAAGGCGTCCACCAAGCCGACAACCGGGGCCATTGAAGAATTGAAGAAAGAGCAAGCCGGTCTCGGTCGGCGGTCGAAGGATGAGGAAATGGTAGAAGGTGTTGCCACGAACAATGGTAAGCAAGACGATTTTGAAGACGAGGGTGATGAGGAAGTCGATTATGGGGAAGAAGAACAAGGTGACTATGATAATGAAGCGGAATCGACTATGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.06

Weight (kDa)

4.29

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 159
AccII CGCG 1 cut(s) 68
AciI CCGC 4 cut(s) 114, 154, 259, 386
AcyI GRCGYC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 4 cut(s) 32, 224, 232, 323
AjiI CACGTC 1 cut(s) 111
AluBI AGCT 2 cut(s) 45, 55
AluI AGCT 2 cut(s) 45, 55
Alw26I GTCTC 3 cut(s) 5, 176, 254
AoxI GGCC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 3 cut(s) 32, 344, 380
BauI CACGAG 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 330
BccI CCATC 2 cut(s) 23, 69
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 3 cut(s) 5, 176, 254
BfaI CTAG 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 214
BmgBI CACGTC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 330
Bpu10I CCTNAGC 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 214
BsaHI GRCGYC 1 cut(s) 194
BsaI GGTCTC 2 cut(s) 5, 254
BsaJI CCNNGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse118I RCCGGY 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 68
Bsh1285I CGRYCG 2 cut(s) 256, 263
BshFI GGCC 1 cut(s) 218
BsiEI CGRYCG 2 cut(s) 256, 263
BsiSI CCGG 2 cut(s) 213, 246
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 3 cut(s) 5, 176, 254
BsnI GGCC 1 cut(s) 218
Bso31I GGTCTC 2 cut(s) 5, 254
Bsp143I GATC 1 cut(s) 22
BspACI CCGC 4 cut(s) 114, 154, 259, 386
BspANI GGCC 1 cut(s) 218
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 159
BspTNI GGTCTC 2 cut(s) 5, 254
BsrFI RCCGGY 1 cut(s) 245
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 1 cut(s) 22
BssNI GRCGYC 1 cut(s) 194
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 1 cut(s) 25
BstMAI GTCTC 3 cut(s) 5, 176, 254
BstMBI GATC 1 cut(s) 22
BstMCI CGRYCG 2 cut(s) 256, 263
BstSCI CCNGG 1 cut(s) 212
BstUI CGCG 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 330
BsuRI GGCC 1 cut(s) 218
BtrI CACGTC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 274
BveI ACCTGC 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 243
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 216
CseI GACGC 1 cut(s) 183
CviJI RGCY 5 cut(s) 45, 55, 205, 218, 245
CviKI_1 RGCY 5 cut(s) 45, 55, 205, 218, 245
DdeI CTNAG 1 cut(s) 41
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
EciI GGCGGA 1 cut(s) 103
Eco31I GGTCTC 2 cut(s) 5, 254
FaiI YATR 5 cut(s) 102, 351, 375, 398, 403
FbaI TGATCA 1 cut(s) 22
FokI GGATG 1 cut(s) 281
FspBI CTAG 1 cut(s) 131
HaeIII GGCC 1 cut(s) 218
HapII CCGG 2 cut(s) 213, 246
HgaI GACGC 1 cut(s) 183
Hin1I GRCGYC 1 cut(s) 194
HinfI GANTC 3 cut(s) 105, 157, 389
HpaII CCGG 2 cut(s) 213, 246
HphI GGTGA 3 cut(s) 32, 344, 380
Hpy166II GTNNAC 1 cut(s) 198
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 4 cut(s) 71, 184, 259, 278
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 110
Hsp92I GRCGYC 1 cut(s) 194
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 3 cut(s) 164, 226, 259
MaeI CTAG 1 cut(s) 131
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 368
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 5 cut(s) 236, 244, 335, 368, 371
MluCI AATT 3 cut(s) 125, 136, 227
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 4 cut(s) 74, 265, 322, 331
MseI TTAA 1 cut(s) 87
MspI CCGG 2 cut(s) 213, 246
MspR9I CCNGG 1 cut(s) 214
MvnI CGCG 1 cut(s) 68
NciI CCSGG 1 cut(s) 214
NdeII GATC 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 217
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 368
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PfeI GAWTC 2 cut(s) 105, 389
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 216
SaqAI TTAA 1 cut(s) 87
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 214
SetI ASST 6 cut(s) 47, 57, 113, 153, 289, 370
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 3 cut(s) 125, 136, 227
SsiI CCGC 4 cut(s) 114, 154, 259, 386
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 212
TaiI ACGT 1 cut(s) 113
TaqI TCGA 5 cut(s) 75, 168, 263, 345, 392
TaqII GACCGA 1 cut(s) 242
TasI AATT 3 cut(s) 125, 136, 227
TfiI GAWTC 2 cut(s) 105, 389
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseFI GTSAC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 1 cut(s) 396
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.