Rmu_sc0016701.1_g000002

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016701.1
OG0000560
Physical Location & Seq
Forward (+)
470 .. 1300
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016701.1_g000002.1.cds

Sequence Viewer

Length: 831 bp
atgcaaagggaagtggcggcagcaaggcagcaagggtcagaatggcaggaagtcagacgctttactgaagcagataacaaagaagcccctataataagagaagactttcataaggattcaggagaacctatggaactggagaccatcggtgaccattttgaaaatgtccttaacttcccaaagctacctcatctgcggtttactgaaggaggggttaaggtcttcaaacatctcaaccctccatttaagttggctgaattagaaacaatgagaaagtttcaccagaaacattcagcccttgcaatttatgggcttccaaggagtcaagactatattctcaatacaatagtagcaaattctgatgccgatcatgctctgattcggcagggtttccatagccgattcattacacctggtttaaaagctttgtatcaagcacatcgcaaaggaatccagaagaaggatatagtagctcaaattccagtttcagaagccgactttcatttccttagatgttttcatagaagtcactcggctgaggaaacctatggcatatcgccagaagaggcccaactcgcaagggaacttgatgattatttagaaaagaaagactttgcaactgaagagcaagcgaaagctgatgccaaagctaaggatattgaacgacaaaaggaagtgcaacaggaggctatggataagacgccaaatggaaaagtccctaccataagagtactgagaggacaggatcaaccgttctcaaatcaagatctagggatgatgaaaaaatatcataggatgtactcagcattggccacttatggcctaactgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

277

Amino Acids

31.9

Weight (kDa)

6.51

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 17, 196
AclWI GGATC 1 cut(s) 753
AcoI YGGCCR 1 cut(s) 810
AcsI RAATTY 2 cut(s) 355, 477
AcuI CTGAAG 3 cut(s) 87, 225, 642
AcyI GRCGYC 1 cut(s) 701
AfaI GTAC 2 cut(s) 732, 800
AfiI CCNNNNNNNGG 1 cut(s) 460
AgsI TTSAA 3 cut(s) 161, 226, 662
AjnI CCWGG 1 cut(s) 412
AloI GAACNNNNNNTCC 2 cut(s) 737, 769
AluBI AGCT 5 cut(s) 184, 425, 473, 638, 650
AluI AGCT 5 cut(s) 184, 425, 473, 638, 650
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 1 cut(s) 753
AoxI GGCC 3 cut(s) 567, 810, 820
ApeKI GCWGC 2 cut(s) 20, 28
ApoI RAATTY 2 cut(s) 355, 477
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 568
AsuHPI GGTGA 2 cut(s) 161, 272
BalI TGGCCA 1 cut(s) 812
BbsI GAAGAC 2 cut(s) 108, 214
BbvCI CCTCAGC 1 cut(s) 537
BbvI GCAGC 2 cut(s) 32, 40
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 770
BglII AGATCT 1 cut(s) 766
BisI GCNGC 3 cut(s) 18, 21, 29
BlsI GCNGC 3 cut(s) 19, 22, 30
BmcAI AGTACT 1 cut(s) 732
Bme1390I CCNGG 1 cut(s) 414
BmgT120I GGNCC 1 cut(s) 568
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 2 cut(s) 352, 631
BpiI GAAGAC 2 cut(s) 108, 214
BpmI CTGGAG 1 cut(s) 158
Bpu10I CCTNAGC 2 cut(s) 537, 651
BsaBI GATNNNNATC 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 701
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 317
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse1I ACTGG 2 cut(s) 141, 482
Bse8I GATNNNNATC 1 cut(s) 366
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 317
BseGI GGATG 2 cut(s) 780, 801
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMII CTCAG 4 cut(s) 528, 725, 816, 819
BseNI ACTGG 2 cut(s) 141, 482
BseXI GCAGC 2 cut(s) 32, 40
BshFI GGCC 3 cut(s) 569, 812, 822
BslFI GGGAC 1 cut(s) 701
BslI CCNNNNNNNGG 1 cut(s) 460
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 701
BsnI GGCC 3 cut(s) 569, 812, 822
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 3 cut(s) 367, 745, 766
BspACI CCGC 2 cut(s) 17, 196
BspANI GGCC 3 cut(s) 569, 812, 822
BspCNI CTCAG 4 cut(s) 529, 726, 815, 820
BspPI GGATC 1 cut(s) 753
BspQI GCTCTTC 1 cut(s) 618
BspTNI GGTCTC 1 cut(s) 134
BsrI ACTGG 2 cut(s) 141, 482
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 3 cut(s) 367, 745, 766
BssNI GRCGYC 1 cut(s) 701
BssT1I CCWWGG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 1 cut(s) 753
Bst6I CTCTTC 2 cut(s) 558, 618
BstACI GRCGYC 1 cut(s) 701
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 6 cut(s) 509, 537, 651, 734, 802, 828
BstEII GGTNACC 1 cut(s) 149
BstF5I GGATG 2 cut(s) 780, 801
BstKTI GATC 3 cut(s) 370, 748, 769
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 3 cut(s) 367, 745, 766
BstMWI GCNNNNNNNGC 2 cut(s) 371, 575
BstNI CCWGG 1 cut(s) 414
BstPI GGTNACC 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 412
BstV1I GCAGC 2 cut(s) 32, 40
BstV2I GAAGAC 2 cut(s) 108, 214
BstX2I RGATCY 1 cut(s) 766
BstYI RGATCY 1 cut(s) 766
BsuRI GGCC 3 cut(s) 569, 812, 822
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 2 cut(s) 780, 801
Cac8I GCNNGC 1 cut(s) 630
Cfr13I GGNCC 1 cut(s) 568
CseI GACGC 2 cut(s) 66, 709
CsiI ACCWGGT 1 cut(s) 412
Csp6I GTAC 2 cut(s) 731, 799
CviAII CATG 1 cut(s) 371
CviQI GTAC 2 cut(s) 731, 799
DdeI CTNAG 6 cut(s) 509, 537, 651, 734, 802, 828
DpnI GATC 3 cut(s) 369, 747, 768
DpnII GATC 3 cut(s) 367, 745, 766
DraI TTTAAA 1 cut(s) 420
EaeI YGGCCR 1 cut(s) 810
Eam1104I CTCTTC 2 cut(s) 558, 618
EarI CTCTTC 2 cut(s) 558, 618
Eco130I CCWWGG 1 cut(s) 317
Eco31I GGTCTC 1 cut(s) 134
Eco57I CTGAAG 3 cut(s) 87, 225, 642
Eco91I GGTNACC 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 317
FaeI CATG 1 cut(s) 374
FalI AAGNNNNNCTT 2 cut(s) 596, 628
FaqI GGGAC 1 cut(s) 701
FatI CATG 1 cut(s) 370
Fnu4HI GCNGC 3 cut(s) 18, 21, 29
FokI GGATG 2 cut(s) 787, 808
Fsp4HI GCNGC 3 cut(s) 18, 21, 29
FspBI CTAG 1 cut(s) 770
GluI GCNGC 3 cut(s) 18, 21, 29
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 3 cut(s) 569, 812, 822
HgaI GACGC 2 cut(s) 66, 709
Hin1I GRCGYC 1 cut(s) 701
Hin1II CATG 1 cut(s) 374
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 5 cut(s) 116, 322, 379, 402, 450
HphI GGTGA 2 cut(s) 161, 272
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 5 cut(s) 40, 56, 361, 378, 490
Hpy188III TCNNGA 4 cut(s) 120, 326, 454, 764
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 2 cut(s) 200, 454
HpyCH4III ACNGT 1 cut(s) 753
HpyCH4V TGCA 4 cut(s) 4, 302, 617, 679
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 575
HpyF3I CTNAG 6 cut(s) 509, 537, 651, 734, 802, 828
Hsp92I GRCGYC 1 cut(s) 701
Hsp92II CATG 1 cut(s) 374
Kzo9I GATC 3 cut(s) 367, 745, 766
LguI GCTCTTC 1 cut(s) 618
Lsp1109I GCAGC 2 cut(s) 32, 40
LweI GCATC 2 cut(s) 352, 631
MabI ACCWGGT 1 cut(s) 412
MaeI CTAG 1 cut(s) 770
MaeIII GTNAC 2 cut(s) 149, 527
MalI GATC 3 cut(s) 369, 747, 768
MboI GATC 3 cut(s) 367, 745, 766
MboII GAAGA 5 cut(s) 113, 214, 469, 575, 635
MflI RGATCY 1 cut(s) 766
MlsI TGGCCA 1 cut(s) 812
MluCI AATT 4 cut(s) 257, 303, 355, 477
MluNI TGGCCA 1 cut(s) 812
MlyI GAGTC 1 cut(s) 331
MnlI CCTC 7 cut(s) 198, 203, 249, 532, 559, 679, 731
Mox20I TGGCCA 1 cut(s) 812
MroXI GAANNNNTTC 1 cut(s) 105
MscI TGGCCA 1 cut(s) 812
MseI TTAA 4 cut(s) 171, 216, 246, 419
Msp20I TGGCCA 1 cut(s) 812
MspR9I CCNGG 1 cut(s) 414
MvaI CCWGG 1 cut(s) 414
MwoI GCNNNNNNNGC 2 cut(s) 371, 575
NdeII GATC 3 cut(s) 367, 745, 766
NlaIII CATG 1 cut(s) 374
NmeAIII GCCGAG 1 cut(s) 512
NmuCI GTSAC 2 cut(s) 149, 527
PciSI GCTCTTC 1 cut(s) 618
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 4 cut(s) 116, 379, 402, 450
PkrI GCNGC 3 cut(s) 19, 22, 30
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 412
PspEI GGTNACC 1 cut(s) 149
PspGI CCWGG 1 cut(s) 412
PspPI GGNCC 1 cut(s) 568
PsuI RGATCY 1 cut(s) 766
RsaI GTAC 2 cut(s) 732, 800
RsaNI GTAC 2 cut(s) 731, 799
SapI GCTCTTC 1 cut(s) 618
SaqAI TTAA 4 cut(s) 171, 216, 246, 419
SatI GCNGC 3 cut(s) 18, 21, 29
Sau3AI GATC 3 cut(s) 367, 745, 766
Sau96I GGNCC 1 cut(s) 568
ScaI AGTACT 1 cut(s) 732
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 1 cut(s) 414
SexAI ACCWGGT 1 cut(s) 412
SfaNI GCATC 2 cut(s) 352, 631
Sse9I AATT 4 cut(s) 257, 303, 355, 477
SsiI CCGC 2 cut(s) 17, 196
SspMI CTAG 1 cut(s) 770
StyD4I CCNGG 1 cut(s) 412
StyI CCWWGG 1 cut(s) 317
TaaI ACNGT 1 cut(s) 753
TasI AATT 4 cut(s) 257, 303, 355, 477
TatI WGTACW 2 cut(s) 730, 798
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 4 cut(s) 116, 379, 402, 450
Tru1I TTAA 4 cut(s) 171, 216, 246, 419
Tru9I TTAA 4 cut(s) 171, 216, 246, 419
TseFI GTSAC 2 cut(s) 149, 527
TseI GCWGC 2 cut(s) 20, 28
Tsp45I GTSAC 2 cut(s) 149, 527
TspDTI ATGAA 5 cut(s) 98, 394, 491, 509, 794
XapI RAATTY 2 cut(s) 355, 477
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 770
ZrmI AGTACT 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.