Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006163.1

Orthogroup ID

OG0000560

Physical Location & Seq

Genomic Coordinates Reverse (-)

31812 .. 34622

Gene Structure 2811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006163.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

atggccaacaattacatgcaacaaccggcgtataacaacaatggtttaggaggacaaaatccacctataaatgggttgacagatgaagaaattagaagaatctatgaagaaactataaggccagctcccaggagaacggccatgctaagaaacactagaccgtatccgaaaagggttgacaatagagtatatccgaggggattcaaatttcccgactttcatctattctgtggagatgattatcaatcaattatagcacatatttctcgattcacaatacgatgtgccaaacactccagagacgacgacttgaagttgaaatggtttgagaactcactgaccagccctgctcatgcttgcgtagctagatatgaggcaatcatcagagaagagacaaaagccagatcagccttgaagggaacttattataagaaccctattgttcatactgtggatgccaatttcgaaggtttgaaggtcgaggaagaagatttcgccgatatcaatgatgtcaaacttttcgtaaacaagccagtggatgataggttttacgaccaagattactttgctagaaatagaggtcgtagaccatacaggacatatcggccaccagttactcatgacaataggtggtatgatcgagcaaccagagatcaacccttttcacctttgacaaaaactcaaaagagacacatgcaaagagaagtggtggccgcaaggcagcaagggtcagaagagcaggaaatcagacgcccaactaaggtagataatagagaaacttccataataatagaggactttcacaaggattcaggggaaccaatggaaattgagaccatcagtgaccagtttgaaaatgttctgagtttcccaaagctatctcatctgtgccggttcattacacctagtttgaaagctttgtggcaagcacatcgcaaaggaatacagatgatggagataatcgctcaaattctagtttcaaaaacagactctcattttcataggtgttttcacagaagccactcggctaaagaaacctatggcataacaccagaagaagtccagcttgcaagagaacttgatgactatttagagaaaaaagacttcgcaactgaagagcaagtgaaggtcgatgccaaagctaagaccgttgaacaagagatggaaattcagaatgctgctaaggataaaacaccaagtgggaaaatccccaccataagagtattgagaggacaagatccacccttctcaaatcaagatctagggatgatgaagaaataccgtagaatgtattcagctttggctacttatggcctaaggaagaaggcgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006950 GO:0008150 GO:0009628 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0034059 GO:0036293 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0050896 GO:0070482 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

444

Amino Acids

52.03

Weight (kDa)

9.19

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis	pycom11g14070
rosa_chinensis	RchiOBHm_Chr6g0263201
rosa_laevigata	RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora	Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha	Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	586
AciI	CCGC	1 cut(s)	714
AclWI	GGATC	1 cut(s)	1232
AcoI	YGGCCR	4 cut(s)	3, 138, 605, 711
AcsI	RAATTY	3 cut(s)	206, 969, 1167
AcuI	CTGAAG	1 cut(s)	1134
AcyI	GRCGYC	1 cut(s)	751
AdeI	CACNNNGTG	1 cut(s)	1199
AfiI	CCNNNNNNNGG	2 cut(s)	71, 760
AgsI	TTSAA	9 cut(s)	205, 313, 319, 415, 475, 854, 913, 981, 1154
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	7 cut(s)	125, 365, 877, 917, 1066, 1142, 1298
AluI	AGCT	7 cut(s)	125, 365, 877, 917, 1066, 1142, 1298
Alw26I	GTCTC	4 cut(s)	294, 386, 682, 827
AlwI	GGATC	1 cut(s)	1232
AoxI	GGCC	6 cut(s)	3, 119, 138, 605, 711, 1312
ApeKI	GCWGC	2 cut(s)	721, 1178
ApoI	RAATTY	3 cut(s)	206, 969, 1167
Asp700I	GAANNNNTTC	2 cut(s)	858, 1291
AsuHPI	GGTGA	1 cut(s)	657
AsuII	TTCGAA	1 cut(s)	465
AxyI	CCTNAGG	1 cut(s)	1316
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	733, 1165
BccI	CCATC	3 cut(s)	845, 946, 1156
BceAI	ACGGC	1 cut(s)	153
BcgI	CGANNNNNNTGC	2 cut(s)	914, 948
BciT130I	CCWGG	1 cut(s)	130
BciVI	GTATCC	1 cut(s)	174
BcoDI	GTCTC	4 cut(s)	294, 386, 682, 827
BfaI	CTAG	6 cut(s)	156, 366, 570, 906, 974, 1262
BfuI	GTATCC	1 cut(s)	174
BglII	AGATCT	1 cut(s)	1258
BisI	GCNGC	3 cut(s)	714, 722, 1179
BlsI	GCNGC	3 cut(s)	715, 723, 1180
Bme1390I	CCNGG	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	819
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	445, 1123
BpmI	CTGGAG	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	1182
Bpu14I	TTCGAA	1 cut(s)	465
BsaBI	GATNNNNATC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	751
BsaI	GGTCTC	1 cut(s)	827
BsaJI	CCNNGG	2 cut(s)	128, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 760
Bse118I	RCCGGY	2 cut(s)	25, 891
Bse1I	ACTGG	3 cut(s)	533, 611, 847
Bse21I	CCTNAGG	1 cut(s)	1316
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	128, 194
BseGI	GGATG	3 cut(s)	460, 544, 1272
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	71, 760
BseMII	CTCAG	1 cut(s)	854
BseNI	ACTGG	3 cut(s)	533, 611, 847
BseXI	GCAGC	2 cut(s)	733, 1165
BshFI	GGCC	6 cut(s)	5, 121, 140, 607, 713, 1314
BsiSI	CCGG	2 cut(s)	26, 892
BslI	CCNNNNNNNGG	2 cut(s)	71, 760
BsmAI	GTCTC	4 cut(s)	294, 386, 682, 827
BsmBI	CGTCTC	1 cut(s)	294
BsmI	GAATGC	1 cut(s)	1180
BsnI	GGCC	6 cut(s)	5, 121, 140, 607, 713, 1314
Bso31I	GGTCTC	1 cut(s)	827
Bsp119I	TTCGAA	1 cut(s)	465
Bsp143I	GATC	5 cut(s)	404, 637, 652, 1237, 1258
BspACI	CCGC	1 cut(s)	714
BspANI	GGCC	6 cut(s)	5, 121, 140, 607, 713, 1314
BspCNI	CTCAG	1 cut(s)	855
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	1 cut(s)	819
BspPI	GGATC	1 cut(s)	1232
BspQI	GCTCTTC	2 cut(s)	729, 1110
BspT104I	TTCGAA	1 cut(s)	465
BspTNI	GGTCTC	1 cut(s)	827
BsrFI	RCCGGY	2 cut(s)	25, 891
BsrI	ACTGG	3 cut(s)	533, 611, 847
BssAI	RCCGGY	2 cut(s)	25, 891
BssECI	CCNNGG	2 cut(s)	128, 194
BssMI	GATC	5 cut(s)	404, 637, 652, 1237, 1258
BssNI	GRCGYC	1 cut(s)	751
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	4 cut(s)	162, 451, 1150, 1283
Bst6I	CTCTTC	3 cut(s)	384, 729, 1110
BstACI	GRCGYC	1 cut(s)	751
BstBI	TTCGAA	1 cut(s)	465
BstC8I	GCNNGC	4 cut(s)	123, 358, 927, 1068
BstDEI	CTNAG	6 cut(s)	146, 759, 863, 1143, 1182, 1316
BstF5I	GGATG	3 cut(s)	460, 544, 1272
BstKTI	GATC	5 cut(s)	407, 640, 655, 1240, 1261
BstMAI	GTCTC	4 cut(s)	294, 386, 682, 827
BstMBI	GATC	5 cut(s)	404, 637, 652, 1237, 1258
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 407
BstNI	CCWGG	1 cut(s)	130
BstNSI	RCATGY	2 cut(s)	19, 697
BstSCI	CCNGG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	733, 1165
BstX2I	RGATCY	2 cut(s)	1237, 1258
BstYI	RGATCY	2 cut(s)	1237, 1258
Bsu36I	CCTNAGG	1 cut(s)	1316
BsuI	GTATCC	1 cut(s)	174
BsuRI	GGCC	6 cut(s)	5, 121, 140, 607, 713, 1314
BtgZI	GCGATG	1 cut(s)	917
BtsCI	GGATG	3 cut(s)	460, 544, 1272
BtsIMutI	CAGTG	3 cut(s)	335, 540, 847
Cac8I	GCNNGC	4 cut(s)	123, 358, 927, 1068
CciI	TCATGA	1 cut(s)	619
Cfr10I	RCCGGY	2 cut(s)	25, 891
CseI	GACGC	1 cut(s)	759
CviAII	CATG	5 cut(s)	16, 142, 353, 620, 694
DdeI	CTNAG	6 cut(s)	146, 759, 863, 1143, 1182, 1316
DpnI	GATC	5 cut(s)	406, 639, 654, 1239, 1260
DpnII	GATC	5 cut(s)	404, 637, 652, 1237, 1258
DraIII	CACNNNGTG	1 cut(s)	1199
EaeI	YGGCCR	4 cut(s)	3, 138, 605, 711
Eam1104I	CTCTTC	3 cut(s)	384, 729, 1110
EarI	CTCTTC	3 cut(s)	384, 729, 1110
Eco31I	GGTCTC	1 cut(s)	827
Eco32I	GATATC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	1134
Eco81I	CCTNAGG	1 cut(s)	1316
EcoRII	CCWGG	1 cut(s)	128
EcoRV	GATATC	1 cut(s)	502
Esp3I	CGTCTC	1 cut(s)	294
FaeI	CATG	5 cut(s)	19, 145, 356, 623, 697
FalI	AAGNNNNNCTT	2 cut(s)	1050, 1082
FatI	CATG	5 cut(s)	15, 141, 352, 619, 693
FblI	GTMKAC	1 cut(s)	586
Fnu4HI	GCNGC	3 cut(s)	714, 722, 1179
FokI	GGATG	3 cut(s)	467, 551, 1279
Fsp4HI	GCNGC	3 cut(s)	714, 722, 1179
FspBI	CTAG	6 cut(s)	156, 366, 570, 906, 974, 1262
GluI	GCNGC	3 cut(s)	714, 722, 1179
GsuI	CTGGAG	1 cut(s)	280
HaeIII	GGCC	6 cut(s)	5, 121, 140, 607, 713, 1314
HapII	CCGG	2 cut(s)	26, 892
HgaI	GACGC	1 cut(s)	759
Hin1I	GRCGYC	1 cut(s)	751
Hin1II	CATG	5 cut(s)	19, 145, 356, 623, 697
HincII	GTYRAC	2 cut(s)	78, 178
HindII	GTYRAC	2 cut(s)	78, 178
HindIII	AAGCTT	1 cut(s)	915
HinfI	GANTC	5 cut(s)	99, 201, 270, 809, 989
HpaII	CCGG	2 cut(s)	26, 892
HphI	GGTGA	1 cut(s)	657
Hpy166II	GTNNAC	4 cut(s)	78, 178, 526, 587
Hpy188I	TCNGA	7 cut(s)	168, 195, 386, 733, 749, 864, 1173
Hpy188III	TCNNGA	5 cut(s)	212, 267, 297, 620, 1256
Hpy8I	GTNNAC	4 cut(s)	78, 178, 526, 587
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	6 cut(s)	409, 461, 469, 1120, 1255, 1318
HpyCH4III	ACNGT	4 cut(s)	162, 451, 1150, 1283
HpyCH4V	TGCA	3 cut(s)	19, 697, 1070
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 407
HpyF3I	CTNAG	6 cut(s)	146, 759, 863, 1143, 1182, 1316
Hsp92I	GRCGYC	1 cut(s)	751
Hsp92II	CATG	5 cut(s)	19, 145, 356, 623, 697
Kzo9I	GATC	5 cut(s)	404, 637, 652, 1237, 1258
LguI	GCTCTTC	2 cut(s)	729, 1110
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	2 cut(s)	733, 1165
LweI	GCATC	2 cut(s)	445, 1123
MaeI	CTAG	6 cut(s)	156, 366, 570, 906, 974, 1262
MaeIII	GTNAC	2 cut(s)	613, 842
MalI	GATC	5 cut(s)	406, 639, 654, 1239, 1260
MboI	GATC	5 cut(s)	404, 637, 652, 1237, 1258
MflI	RGATCY	2 cut(s)	1237, 1258
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	10, 90, 206, 249, 460, 828, 969, 1167
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	983
MnlI	CCTC	7 cut(s)	44, 189, 367, 475, 572, 787, 1223
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	858, 1291
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	26, 892
MspR9I	CCNGG	1 cut(s)	130
Mva1269I	GAATGC	1 cut(s)	1180
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	362, 407
NdeII	GATC	5 cut(s)	404, 637, 652, 1237, 1258
NlaIII	CATG	5 cut(s)	19, 145, 356, 623, 697
NlaIV	GGNNCC	1 cut(s)	819
NmeAIII	GCCGAG	1 cut(s)	1004
NmuCI	GTSAC	1 cut(s)	842
NspI	RCATGY	2 cut(s)	19, 697
NspV	TTCGAA	1 cut(s)	465
PagI	TCATGA	1 cut(s)	619
PciSI	GCTCTTC	2 cut(s)	729, 1110
PctI	GAATGC	1 cut(s)	1180
PdmI	GAANNNNTTC	2 cut(s)	858, 1291
PfeI	GAWTC	4 cut(s)	99, 201, 270, 809
PkrI	GCNGC	3 cut(s)	715, 723, 1180
PleI	GAGTC	1 cut(s)	983
PpsI	GAGTC	1 cut(s)	983
PsiI	TTATAA	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	819
PsuI	RGATCY	2 cut(s)	1237, 1258
SapI	GCTCTTC	2 cut(s)	729, 1110
SatI	GCNGC	3 cut(s)	714, 722, 1179
Sau3AI	GATC	5 cut(s)	404, 637, 652, 1237, 1258
SchI	GAGTC	1 cut(s)	983
ScrFI	CCNGG	1 cut(s)	130
SfaNI	GCATC	2 cut(s)	445, 1123
SfuI	TTCGAA	1 cut(s)	465
Sse9I	AATT	8 cut(s)	10, 90, 206, 249, 460, 828, 969, 1167
SsiI	CCGC	1 cut(s)	714
SspMI	CTAG	6 cut(s)	156, 366, 570, 906, 974, 1262
StyD4I	CCNGG	1 cut(s)	128
TaaI	ACNGT	4 cut(s)	162, 451, 1150, 1283
TaqI	TCGA	5 cut(s)	268, 465, 480, 640, 1131
TasI	AATT	8 cut(s)	10, 90, 206, 249, 460, 828, 969, 1167
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	4 cut(s)	99, 201, 270, 809
TscAI	CASTG	3 cut(s)	342, 540, 847
TseFI	GTSAC	1 cut(s)	842
TseI	GCWGC	2 cut(s)	721, 1178
Tsp45I	GTSAC	1 cut(s)	842
TspDTI	ATGAA	7 cut(s)	99, 120, 209, 434, 886, 989, 1286
TspRI	CASTG	3 cut(s)	342, 540, 847
XapI	RAATTY	3 cut(s)	206, 969, 1167
XceI	RCATGY	2 cut(s)	19, 697
XmiI	GTMKAC	1 cut(s)	586
XmnI	GAANNNNTTC	2 cut(s)	858, 1291
XspI	CTAG	6 cut(s)	156, 366, 570, 906, 974, 1262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.