Rmu_co8107100.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8107100.1
OG0000560
Physical Location & Seq
Reverse (-)
2 .. 380
379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8107100.1_g000001.1.cds

Sequence Viewer

Length: 379 bp
atgtacgggatgactactcaggaaagcaagctgatgaaacatttcgaccaccatgtccgagaagaagaaaaccgtcagcaagctcaagcaaaccaagacttggccaaatggttagaagatactgacacaaatgataagcataaccagcatttagatgacttggatcttgaagtcgatggtcaaggtgataagggcatattggaggatgatgaaggcctattggatgaggatatgggggattatgatgacatatgggattatgaggaacaggttgagtatgatgatggcgatcaggttcctgatatcctaacctccaatccacagtttgataccaccatgaacactttgaccgagacaagtgtccaccttcggccaggga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.64

Weight (kDa)

4.05

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
AccB7I CCANNNNNTGG 1 cut(s) 100
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 2 cut(s) 102, 371
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 1 cut(s) 170
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 2 cut(s) 31, 83
AluI AGCT 2 cut(s) 31, 83
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 1 cut(s) 171
AoxI GGCC 3 cut(s) 102, 214, 371
Asp700I GAANNNNTTC 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 197
BalI TGGCCA 1 cut(s) 104
BccI CCATC 2 cut(s) 170, 278
BciT130I CCWGG 1 cut(s) 375
BcoDI GTCTC 1 cut(s) 347
Bme1390I CCNGG 1 cut(s) 375
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 1 cut(s) 375
BoxI GACNNNNGTC 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 374
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 3 cut(s) 15, 211, 229
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 32
BshFI GGCC 3 cut(s) 104, 216, 373
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 347
BsnI GGCC 3 cut(s) 104, 216, 373
Bsp143I GATC 2 cut(s) 163, 289
BspANI GGCC 3 cut(s) 104, 216, 373
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 297
BspPI GGATC 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 2 cut(s) 163, 289
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 2 cut(s) 74, 324
BstC8I GCNNGC 2 cut(s) 29, 81
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 3 cut(s) 15, 211, 229
BstKTI GATC 2 cut(s) 166, 292
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 2 cut(s) 163, 289
BstMWI GCNNNNNNNGC 1 cut(s) 145
BstNI CCWGG 1 cut(s) 375
BstPAI GACNNNNGTC 1 cut(s) 359
BstSCI CCNGG 1 cut(s) 373
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuRI GGCC 3 cut(s) 104, 216, 373
BtsCI GGATG 3 cut(s) 15, 211, 229
Cac8I GCNNGC 2 cut(s) 29, 81
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 53, 337
CviJI RGCY 5 cut(s) 31, 83, 104, 216, 373
CviKI_1 RGCY 5 cut(s) 31, 83, 104, 216, 373
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 18
DpnI GATC 2 cut(s) 165, 291
DpnII GATC 2 cut(s) 163, 289
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
EaeI YGGCCR 2 cut(s) 102, 371
Eco147I AGGCCT 1 cut(s) 216
Eco32I GATATC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 373
EcoRV GATATC 1 cut(s) 304
FaeI CATG 2 cut(s) 56, 340
FatI CATG 2 cut(s) 52, 336
FauNDI CATATG 1 cut(s) 251
FokI GGATG 3 cut(s) 22, 218, 236
HaeIII GGCC 3 cut(s) 104, 216, 373
Hin1II CATG 2 cut(s) 56, 340
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 3 cut(s) 20, 167, 299
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 2 cut(s) 206, 377
HpyCH4III ACNGT 2 cut(s) 74, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 145
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 2 cut(s) 56, 340
Kzo9I GATC 2 cut(s) 163, 289
LpnPI CCDG 6 cut(s) 5, 158, 254, 278, 312, 360
MalI GATC 2 cut(s) 165, 291
MboI GATC 2 cut(s) 163, 289
MboII GAAGA 3 cut(s) 74, 77, 128
MflI RGATCY 1 cut(s) 163
MlsI TGGCCA 1 cut(s) 104
MluNI TGGCCA 1 cut(s) 104
MnlI CCTC 4 cut(s) 196, 220, 256, 322
Mox20I TGGCCA 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 41
MscI TGGCCA 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 375
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 145
NdeI CATATG 1 cut(s) 251
NdeII GATC 2 cut(s) 163, 289
NlaIII CATG 2 cut(s) 56, 340
NlaIV GGNNCC 1 cut(s) 297
PceI AGGCCT 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 41
PflMI CCANNNNNTGG 1 cut(s) 100
PshAI GACNNNNGTC 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 297
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 153
Sau3AI GATC 2 cut(s) 163, 289
ScrFI CCNGG 1 cut(s) 375
SetI ASST 7 cut(s) 33, 85, 187, 273, 297, 314, 369
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
SseBI AGGCCT 1 cut(s) 216
StuI AGGCCT 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 373
TaaI ACNGT 2 cut(s) 74, 324
TaqI TCGA 2 cut(s) 45, 174
TaqII GACCGA 1 cut(s) 365
TspDTI ATGAA 3 cut(s) 50, 225, 353
Van91I CCANNNNNTGG 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.