Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000560

Physical Location & Seq

Genomic Coordinates Forward (+)

29601315 .. 29601872

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG291300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGTTGAAGGAGTTTTGAAACTCCAGGGGCCAGAGCAGGTTGATAAAACTTCTAATTCAGCTCAGAAAGCCGAGAGTGCACCAACAAGAGCCAGAATAAGGAATACACCTGAAAAGGTACATTCCAGAGTAGAACCTCGGGGTAAAGTAATTATCTCGGCCAAAGTAGGTAAGGCCGAGGTAGACAAACAGAGATTCAGGTCTCAAGTTACCACAAAGCGACCATTGACCCCAGATGCATCGAACAAGTACGGTCCGCACATTCCAAGGGGAAGTCCGAAGGGTGTGTTCCATCGTCTTGATAAACCGGACATAAGATTTTCCGAAAGGGAGCCAGTTAGGCGGCGCCTGAACTTTGATCGGCCATTTTATGATGAAGAATATTACGTCCGAAATGAGAGGGACAAAAAGAGATATCCTAGAGACGAAGGTTGTAGTCGTGATAGCTATAACCGTGATGGAAACTCCCGGCCACTAAGGACTTTCAAGGGACCAACCGATTGCCCCCATGACGAAAACACAATTGCGAAGACAGCAAAGGCAAGTGGCCGAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

185

Amino Acids

21.22

Weight (kDa)

10.1

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis	pycom11g14070
rosa_chinensis	RchiOBHm_Chr6g0263201
rosa_laevigata	RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora	Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha	Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	345
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	2 cut(s)	257, 343
AcoI	YGGCCR	4 cut(s)	159, 362, 470, 547
AcyI	GRCGYC	1 cut(s)	346
AfaI	GTAC	2 cut(s)	120, 251
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	3 cut(s)	8, 19, 487
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	2 cut(s)	62, 447
AluI	AGCT	2 cut(s)	62, 447
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	2 cut(s)	207, 417
Alw44I	GTGCAC	1 cut(s)	78
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	6 cut(s)	29, 159, 174, 362, 470, 547
ApaLI	GTGCAC	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	3 cut(s)	29, 254, 491
AsuC2I	CCSGG	1 cut(s)	469
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	2 cut(s)	254, 491
BaeGI	GKGCMC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	82
BccI	CCATC	2 cut(s)	300, 452
BciT130I	CCWGG	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	207, 417
BfaI	CTAG	1 cut(s)	420
BfoI	RGCGCY	1 cut(s)	349
BfuAI	ACCTGC	1 cut(s)	28
BglI	GCCNNNNNGGC	1 cut(s)	340
BisI	GCNGC	1 cut(s)	344
BlsI	GCNGC	1 cut(s)	345
Bme1390I	CCNGG	2 cut(s)	26, 469
Bme18I	GGWCC	2 cut(s)	254, 491
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	3 cut(s)	29, 254, 491
BmiI	GGNNCC	4 cut(s)	30, 333, 347, 492
BmrFI	CCNGG	2 cut(s)	26, 469
BmsI	GCATC	2 cut(s)	226, 248
BpiI	GAAGAC	1 cut(s)	536
BpmI	CTGGAG	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	469
BsaHI	GRCGYC	1 cut(s)	346
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	5 cut(s)	25, 137, 177, 266, 550
BsaWI	WCCGGW	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	335
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	5 cut(s)	25, 137, 177, 266, 550
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	335
BseSI	GKGCMC	1 cut(s)	82
BshFI	GGCC	6 cut(s)	31, 161, 176, 364, 472, 549
BshNI	GGYRCC	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	308, 469
BslFI	GGGAC	2 cut(s)	416, 504
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmAI	GTCTC	2 cut(s)	207, 417
BsmBI	CGTCTC	1 cut(s)	417
BsmFI	GGGAC	2 cut(s)	416, 504
BsnI	GGCC	6 cut(s)	31, 161, 176, 364, 472, 549
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	358
BspACI	CCGC	2 cut(s)	257, 343
BspANI	GGCC	6 cut(s)	31, 161, 176, 364, 472, 549
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	4 cut(s)	30, 333, 347, 492
BspMI	ACCTGC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	345
BspTNI	GGTCTC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	5 cut(s)	25, 137, 177, 266, 550
BssMI	GATC	1 cut(s)	358
BssNI	GRCGYC	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	2 cut(s)	254, 455
BstACI	GRCGYC	1 cut(s)	346
BstDEI	CTNAG	2 cut(s)	63, 476
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	2 cut(s)	207, 417
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 77, 340, 533
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	24, 467
BstSLI	GKGCMC	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	536
BsuRI	GGCC	6 cut(s)	31, 161, 176, 364, 472, 549
BveI	ACCTGC	1 cut(s)	28
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	3 cut(s)	29, 254, 491
CpoI	CGGWCCG	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	119, 250
CspI	CGGWCCG	1 cut(s)	254
CviAII	CATG	1 cut(s)	509
CviQI	GTAC	2 cut(s)	119, 250
DdeI	CTNAG	2 cut(s)	63, 476
DinI	GGCGCC	1 cut(s)	347
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
EaeI	YGGCCR	4 cut(s)	159, 362, 470, 547
Eco130I	CCWWGG	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	207
Eco32I	GATATC	1 cut(s)	416
Eco47I	GGWCC	2 cut(s)	254, 491
Eco88I	CYCGRG	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	24
EcoRV	GATATC	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	266
EcoT22I	ATGCAT	1 cut(s)	241
EgeI	GGCGCC	1 cut(s)	347
EheI	GGCGCC	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	266
Esp3I	CGTCTC	1 cut(s)	417
FaeI	CATG	1 cut(s)	512
FaiI	YATR	4 cut(s)	314, 372, 450, 510
FaqI	GGGAC	2 cut(s)	416, 504
FatI	CATG	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	344
Fsp4HI	GCNGC	1 cut(s)	344
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	1 cut(s)	344
GsuI	CTGGAG	1 cut(s)	8
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	6 cut(s)	31, 161, 176, 364, 472, 549
HapII	CCGG	2 cut(s)	308, 469
HhaI	GCGC	1 cut(s)	348
Hin1I	GRCGYC	1 cut(s)	346
Hin1II	CATG	1 cut(s)	512
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	1 cut(s)	195
HpaII	CCGG	2 cut(s)	308, 469
Hpy166II	GTNNAC	2 cut(s)	80, 184
Hpy188I	TCNGA	4 cut(s)	66, 279, 325, 392
Hpy188III	TCNNGA	3 cut(s)	126, 299, 440
Hpy8I	GTNNAC	2 cut(s)	80, 184
HpyAV	CCTTC	2 cut(s)	274, 422
HpyCH4III	ACNGT	2 cut(s)	254, 455
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	2 cut(s)	80, 239
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 77, 340, 533
HpyF3I	CTNAG	2 cut(s)	63, 476
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	1 cut(s)	346
Hsp92II	CATG	1 cut(s)	512
HspAI	GCGC	1 cut(s)	346
KasI	GGCGCC	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	331
LweI	GCATC	2 cut(s)	226, 248
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	2 cut(s)	389, 541
MfeI	CAATTG	1 cut(s)	522
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	3 cut(s)	55, 150, 522
Mly113I	GGCGCC	1 cut(s)	346
MnlI	CCTC	4 cut(s)	147, 172, 393, 545
Mph1103I	ATGCAT	1 cut(s)	241
MspI	CCGG	2 cut(s)	308, 469
MspR9I	CCNGG	2 cut(s)	26, 469
MunI	CAATTG	1 cut(s)	522
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	4 cut(s)	68, 77, 340, 533
NarI	GGCGCC	1 cut(s)	346
NciI	CCSGG	1 cut(s)	469
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	1 cut(s)	512
NlaIV	GGNNCC	4 cut(s)	30, 333, 347, 492
NmeAIII	GCCGAG	3 cut(s)	97, 137, 202
NsiI	ATGCAT	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	345
PluTI	GGCGCC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	4 cut(s)	30, 333, 347, 492
PspPI	GGNCC	3 cut(s)	29, 254, 491
RsaI	GTAC	2 cut(s)	120, 251
RsaNI	GTAC	2 cut(s)	119, 250
Rsr2I	CGGWCCG	1 cut(s)	254
RsrII	CGGWCCG	1 cut(s)	254
SatI	GCNGC	1 cut(s)	344
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	3 cut(s)	29, 254, 491
ScrFI	CCNGG	2 cut(s)	26, 469
SduI	GDGCHC	1 cut(s)	82
SfaNI	GCATC	2 cut(s)	226, 248
SfoI	GGCGCC	1 cut(s)	347
SinI	GGWCC	2 cut(s)	254, 491
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	3 cut(s)	55, 150, 522
SsiI	CCGC	2 cut(s)	257, 343
SspDI	GGCGCC	1 cut(s)	345
SspI	AATATT	1 cut(s)	383
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	24, 467
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	2 cut(s)	254, 455
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	242
TasI	AATT	3 cut(s)	55, 150, 522
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	390
VneI	GTGCAC	1 cut(s)	78
VpaK11BI	GGWCC	2 cut(s)	254, 491
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	1 cut(s)	420
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.