Rroxscaffold_2G00079860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000560
Physical Location & Seq
Reverse (-)
2804402 .. 2805228
827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00079860.1

Sequence Viewer

Length: 345 bp
ATGAGGCAATCATTAGAGAAGAAACTCAAGCTAGATCAGCCTCAAAGGGAACTTACTATAAAAATCCTACTTGTCCATGCCATGGAGGCCAAGTTTGAAGGTTTGAAGGTCGAGGAAGAATATTCGGCCGATATCAATGCCGCTGAATTATTTATAAACAAGCCGGTGGAGGAGCCGGTTTATGACGATCGGGATGAAGATGCTTATGATATGACAATGCCACCGGCTTTGAAGGCCTCATCATCATCTACTTCAAAAGCACCGCCGGTCTTTGTGATTCTCGTGCGGCCGTTGCAATGCGAGGTAACCCTCGGTAACCTTCGCAAATCAAGAACCAAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.92

Weight (kDa)

5.49

Isoelectric Point (pI)

57.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
AccB7I CCANNNNNTGG 1 cut(s) 82
AciI CCGC 3 cut(s) 141, 263, 286
AcoI YGGCCR 2 cut(s) 126, 287
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 4 cut(s) 98, 106, 232, 255
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
AoxI GGCC 4 cut(s) 87, 126, 234, 287
BauI CACGAG 1 cut(s) 281
BceAI ACGGC 1 cut(s) 274
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BfaI CTAG 1 cut(s) 32
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 2 cut(s) 141, 287
BlsI GCNGC 2 cut(s) 142, 288
BmiI GGNNCC 1 cut(s) 174
BmsI GCATC 1 cut(s) 190
BpuEI CTTGAG 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 81, 310
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse118I RCCGGY 4 cut(s) 163, 175, 223, 265
Bse3DI GCAATG 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 81, 310
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMI GCAATG 1 cut(s) 302
BseRI GAGGAG 1 cut(s) 185
BseX3I CGGCCG 2 cut(s) 126, 287
Bsh1285I CGRYCG 3 cut(s) 129, 190, 290
BshFI GGCC 4 cut(s) 89, 128, 236, 289
BsiEI CGRYCG 3 cut(s) 129, 190, 290
BsiSI CCGG 4 cut(s) 164, 176, 224, 266
BslI CCNNNNNNNGG 1 cut(s) 82
BsnI GGCC 4 cut(s) 89, 128, 236, 289
Bsp143I GATC 2 cut(s) 34, 187
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 3 cut(s) 141, 263, 286
BspANI GGCC 4 cut(s) 89, 128, 236, 289
BspLI GGNNCC 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 302
BsrFI RCCGGY 4 cut(s) 163, 175, 223, 265
BssAI RCCGGY 4 cut(s) 163, 175, 223, 265
BssECI CCNNGG 2 cut(s) 81, 310
BssMI GATC 2 cut(s) 34, 187
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 81
Bst2BI CACGAG 1 cut(s) 281
BstDSI CCRYGG 1 cut(s) 81
BstEII GGTNACC 2 cut(s) 304, 314
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 2 cut(s) 37, 190
BstMBI GATC 2 cut(s) 34, 187
BstMCI CGRYCG 3 cut(s) 129, 190, 290
BstMWI GCNNNNNNNGC 4 cut(s) 37, 86, 233, 292
BstPI GGTNACC 2 cut(s) 304, 314
BstZI CGGCCG 2 cut(s) 126, 287
BsuRI GGCC 4 cut(s) 89, 128, 236, 289
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 199
Cfr10I RCCGGY 4 cut(s) 163, 175, 223, 265
CspCI CAANNNNNGTGG 2 cut(s) 210, 245
CviAII CATG 2 cut(s) 77, 82
CviJI RGCY 9 cut(s) 31, 40, 89, 128, 163, 175, 227, 236, 289
CviKI_1 RGCY 9 cut(s) 31, 40, 89, 128, 163, 175, 227, 236, 289
DpnI GATC 2 cut(s) 36, 189
DpnII GATC 2 cut(s) 34, 187
EaeI YGGCCR 2 cut(s) 126, 287
EagI CGGCCG 2 cut(s) 126, 287
EclXI CGGCCG 2 cut(s) 126, 287
Eco130I CCWWGG 1 cut(s) 81
Eco147I AGGCCT 1 cut(s) 236
Eco32I GATATC 1 cut(s) 133
Eco52I CGGCCG 2 cut(s) 126, 287
Eco91I GGTNACC 2 cut(s) 304, 314
EcoO65I GGTNACC 2 cut(s) 304, 314
EcoRV GATATC 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 2 cut(s) 80, 85
FaiI YATR 7 cut(s) 59, 78, 83, 155, 183, 207, 212
FatI CATG 2 cut(s) 76, 81
Fnu4HI GCNGC 2 cut(s) 141, 287
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 141, 287
FspBI CTAG 1 cut(s) 32
GluI GCNGC 2 cut(s) 141, 287
HaeIII GGCC 4 cut(s) 89, 128, 236, 289
HapII CCGG 4 cut(s) 164, 176, 224, 266
Hin1II CATG 2 cut(s) 80, 85
HinfI GANTC 1 cut(s) 277
HpaII CCGG 4 cut(s) 164, 176, 224, 266
Hpy188III TCNNGA 2 cut(s) 191, 330
HpyAV CCTTC 4 cut(s) 92, 100, 226, 329
HpyCH4V TGCA 1 cut(s) 295
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 86, 233, 292
Hsp92II CATG 2 cut(s) 80, 85
Kzo9I GATC 2 cut(s) 34, 187
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 4 cut(s) 177, 189, 237, 279
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 2 cut(s) 304, 314
MalI GATC 2 cut(s) 36, 189
MboI GATC 2 cut(s) 34, 187
MboII GAAGA 3 cut(s) 31, 128, 209
MluCI AATT 1 cut(s) 146
MnlI CCTC 7 cut(s) 51, 79, 106, 163, 247, 295, 320
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 4 cut(s) 164, 176, 224, 266
MwoI GCNNNNNNNGC 4 cut(s) 37, 86, 233, 292
NcoI CCATGG 1 cut(s) 81
NdeII GATC 2 cut(s) 34, 187
NlaIII CATG 2 cut(s) 80, 85
NlaIV GGNNCC 1 cut(s) 174
PceI AGGCCT 1 cut(s) 236
PfeI GAWTC 1 cut(s) 277
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 2 cut(s) 142, 288
Ple19I CGATCG 1 cut(s) 190
PsiI TTATAA 1 cut(s) 155
PspEI GGTNACC 2 cut(s) 304, 314
PspN4I GGNNCC 1 cut(s) 174
PvuI CGATCG 1 cut(s) 190
SatI GCNGC 2 cut(s) 141, 287
Sau3AI GATC 2 cut(s) 34, 187
SetI ASST 5 cut(s) 33, 103, 111, 306, 321
SfaNI GCATC 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 1 cut(s) 146
SseBI AGGCCT 1 cut(s) 236
SsiI CCGC 3 cut(s) 141, 263, 286
SspI AATATT 1 cut(s) 122
SspMI CTAG 1 cut(s) 32
StuI AGGCCT 1 cut(s) 236
StyI CCWWGG 1 cut(s) 81
TaqI TCGA 1 cut(s) 111
TasI AATT 1 cut(s) 146
TauI GCSGC 2 cut(s) 143, 289
TfiI GAWTC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 210
Van91I CCANNNNNTGG 1 cut(s) 82
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.