Rh3BG345200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000560
Physical Location & Seq
Reverse (-)
37675745 .. 37681086
5342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG345200.1

Sequence Viewer

Length: 318 bp
ATGATCGAGGTAGAAGAGGAATCTGAGTTTGAGAAGCCAACTGGTGTTAGCTTTGAAGAAGACTTCATTATCCGTAATGAAGACCTCACCGGCCGCAACGGCAGCTTGAATAGCCGTGATCATGATGAAGACCTCATTGGCCGCGGCGGAAGCTTGAATAGCCGCGACCATGATGAAGACCTCATTGGCCGCGGCGGAAGTTTCAATAACCGTGACCATGGTGAAGACCCCACCGGCCATGGTGAAGGAGGTGAGGTGGATGAAGGAGTTGCAGCGTCATCATCACAGAATCAGGAGTCTAAAGAGCTTATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.49

Weight (kDa)

4.25

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 144, 165, 192
AciI CCGC 8 cut(s) 94, 142, 144, 147, 163, 190, 192, 195
AcoI YGGCCR 4 cut(s) 91, 139, 187, 235
AgsI TTSAA 5 cut(s) 56, 109, 157, 205, 314
AjuI GAANNNNNNNTTGG 4 cut(s) 120, 152, 168, 200
AluBI AGCT 4 cut(s) 51, 105, 153, 307
AluI AGCT 4 cut(s) 51, 105, 153, 307
AoxI GGCC 4 cut(s) 91, 139, 187, 235
ApeKI GCWGC 2 cut(s) 102, 272
AsuHPI GGTGA 4 cut(s) 79, 233, 254, 263
BbsI GAAGAC 5 cut(s) 66, 87, 135, 183, 231
BbvI GCAGC 2 cut(s) 114, 284
BceAI ACGGC 2 cut(s) 99, 115
BclI TGATCA 1 cut(s) 118
BglI GCCNNNNNGGC 1 cut(s) 99
BisI GCNGC 8 cut(s) 94, 103, 142, 145, 163, 190, 193, 273
BlsI GCNGC 8 cut(s) 95, 104, 143, 146, 164, 191, 194, 274
BpiI GAAGAC 5 cut(s) 66, 87, 135, 183, 231
BsaJI CCNNGG 4 cut(s) 142, 190, 217, 238
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bse118I RCCGGY 2 cut(s) 89, 233
Bse1I ACTGG 1 cut(s) 46
BseDI CCNNGG 4 cut(s) 142, 190, 217, 238
BseGI GGATG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 46
BseX3I CGGCCG 1 cut(s) 91
BseXI GCAGC 2 cut(s) 114, 284
Bsh1236I CGCG 3 cut(s) 144, 165, 192
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 4 cut(s) 93, 141, 189, 237
BsiEI CGRYCG 1 cut(s) 94
BsiSI CCGG 2 cut(s) 90, 234
BsnI GGCC 4 cut(s) 93, 141, 189, 237
Bsp143I GATC 2 cut(s) 3, 118
Bsp19I CCATGG 2 cut(s) 217, 238
BspACI CCGC 8 cut(s) 94, 142, 144, 147, 163, 190, 192, 195
BspANI GGCC 4 cut(s) 93, 141, 189, 237
BspCNI CTCAG 1 cut(s) 16
BspFNI CGCG 3 cut(s) 144, 165, 192
BspHI TCATGA 1 cut(s) 121
BsrFI RCCGGY 2 cut(s) 89, 233
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 2 cut(s) 89, 233
BssECI CCNNGG 4 cut(s) 142, 190, 217, 238
BssMI GATC 2 cut(s) 3, 118
BssT1I CCWWGG 2 cut(s) 217, 238
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 24
BstDSI CCRYGG 4 cut(s) 142, 190, 217, 238
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 3 cut(s) 144, 165, 192
BstKTI GATC 2 cut(s) 6, 121
BstMBI GATC 2 cut(s) 3, 118
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 5 cut(s) 99, 102, 111, 150, 159
BstUI CGCG 3 cut(s) 144, 165, 192
BstV1I GCAGC 2 cut(s) 114, 284
BstV2I GAAGAC 5 cut(s) 66, 87, 135, 183, 231
BstZI CGGCCG 1 cut(s) 91
BsuRI GGCC 4 cut(s) 93, 141, 189, 237
BtgI CCRYGG 4 cut(s) 142, 190, 217, 238
BtsCI GGATG 1 cut(s) 265
CciI TCATGA 1 cut(s) 121
Cfr10I RCCGGY 2 cut(s) 89, 233
Cfr42I CCGCGG 2 cut(s) 145, 193
CseI GACGC 1 cut(s) 264
CviAII CATG 4 cut(s) 122, 170, 218, 239
DdeI CTNAG 1 cut(s) 24
DpnI GATC 2 cut(s) 5, 120
DpnII GATC 2 cut(s) 3, 118
EaeI YGGCCR 4 cut(s) 91, 139, 187, 235
EagI CGGCCG 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
EciI GGCGGA 2 cut(s) 162, 210
EclXI CGGCCG 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 217, 238
Eco52I CGGCCG 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 217, 238
ErhI CCWWGG 2 cut(s) 217, 238
FaeI CATG 4 cut(s) 125, 173, 221, 242
FaiI YATR 4 cut(s) 123, 171, 219, 240
FatI CATG 4 cut(s) 121, 169, 217, 238
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 8 cut(s) 94, 103, 142, 145, 163, 190, 193, 273
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 8 cut(s) 94, 103, 142, 145, 163, 190, 193, 273
GluI GCNGC 8 cut(s) 94, 103, 142, 145, 163, 190, 193, 273
HaeIII GGCC 4 cut(s) 93, 141, 189, 237
HapII CCGG 2 cut(s) 90, 234
HgaI GACGC 1 cut(s) 264
Hin1II CATG 4 cut(s) 125, 173, 221, 242
HindIII AAGCTT 1 cut(s) 151
HinfI GANTC 3 cut(s) 20, 289, 296
HpaII CCGG 2 cut(s) 90, 234
HphI GGTGA 4 cut(s) 79, 233, 254, 263
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 122, 293
HpyAV CCTTC 2 cut(s) 239, 257
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4V TGCA 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 102, 111, 150, 159
HpyF3I CTNAG 1 cut(s) 24
Hsp92II CATG 4 cut(s) 125, 173, 221, 242
Ksp22I TGATCA 1 cut(s) 118
KspI CCGCGG 2 cut(s) 145, 193
Kzo9I GATC 2 cut(s) 3, 118
LpnPI CCDG 4 cut(s) 27, 103, 247, 278
Lsp1109I GCAGC 2 cut(s) 114, 284
MaeIII GTNAC 1 cut(s) 212
MalI GATC 2 cut(s) 5, 120
MboI GATC 2 cut(s) 3, 118
MboII GAAGA 7 cut(s) 26, 68, 71, 92, 140, 188, 236
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 6 cut(s) 10, 95, 143, 191, 242, 247
MspA1I CMGCKG 2 cut(s) 144, 192
MspI CCGG 2 cut(s) 90, 234
MvnI CGCG 3 cut(s) 144, 165, 192
MwoI GCNNNNNNNGC 5 cut(s) 99, 102, 111, 150, 159
NcoI CCATGG 2 cut(s) 217, 238
NdeII GATC 2 cut(s) 3, 118
NlaIII CATG 4 cut(s) 125, 173, 221, 242
NmuCI GTSAC 1 cut(s) 212
PagI TCATGA 1 cut(s) 121
PfeI GAWTC 2 cut(s) 20, 289
PkrI GCNGC 8 cut(s) 95, 104, 143, 146, 164, 191, 194, 274
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
SacII CCGCGG 2 cut(s) 145, 193
SatI GCNGC 8 cut(s) 94, 103, 142, 145, 163, 190, 193, 273
Sau3AI GATC 2 cut(s) 3, 118
SchI GAGTC 1 cut(s) 305
Sfr303I CCGCGG 2 cut(s) 145, 193
SgrBI CCGCGG 2 cut(s) 145, 193
SsiI CCGC 8 cut(s) 94, 142, 144, 147, 163, 190, 192, 195
StyI CCWWGG 2 cut(s) 217, 238
TaaI ACNGT 1 cut(s) 212
TaqI TCGA 1 cut(s) 6
TauI GCSGC 6 cut(s) 96, 144, 147, 165, 192, 195
TfiI GAWTC 2 cut(s) 20, 289
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 2 cut(s) 102, 272
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 5 cut(s) 55, 93, 141, 189, 276
TspGWI ACGGA 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.