Rh3BG345300

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000560
Physical Location & Seq
Reverse (-)
37681147 .. 37681791
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG345300.1

Sequence Viewer

Length: 645 bp
ATGTCCACAACAACCCCAGAGCTACATGTAGAGGATGAGAAGAAAGGAACCAGTTATGTTCCTGCTATAGAGAAAGCTCCAGCAACTGCGTCTGACAAGTTGTCCCAAGAGGTCAAGGGGAACTCTCAAGTTGAGAAGTTAAAAGTTGAAGTTCTGAGAAACAAGCTACCTCCTTTTTCCTCGAAGAGTTGGACTACCATGAAGGAGTACCACAGGACACATTCGGCTTTAGCTTTGTACGGGCCAACATGGGAAGAACTTGACACTCTAAAGGCTTTAATAGAAAACCCAGGGCTTGAGCCTTTGATGGTGCAAAGTACATCAAGTGCAGGATTGAAGATTTTGTATCAGGCACAATTAGATGGTGTGGAGTTGGTGGCGAACACTGTTGATTTACCAGTATCCCAGCGAGATCTCAAGTATCTCAAGGAGTACCACAAAATGTATTCGGTTATCAGTACATATGGAGTAACTCCACAAGAGAGGAAGTTGTTGGTGAAGATGGAAGAACGCATCCGCCAACGAGAACTTGAATATGCTGCGGAGCTTGGCAAGGGAGATTCTGATTTTGAGTTGGAAGTGGAACTAGCAAACATGGATATAGACTGCAATGACACCCATCAACAAACCAGTTCTCTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

214

Amino Acids

24.13

Weight (kDa)

5.15

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 517, 542
AfaI GTAC 5 cut(s) 209, 239, 319, 434, 460
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 3 cut(s) 149, 337, 533
AhdI GACNNNNNGTC 1 cut(s) 100
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 5 cut(s) 22, 77, 166, 233, 547
AluI AGCT 5 cut(s) 22, 77, 166, 233, 547
AlwNI CAGNNNCTG 1 cut(s) 86
AoxI GGCC 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 539
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 508
BbvI GCAGC 1 cut(s) 526
BccI CCATC 4 cut(s) 301, 356, 496, 627
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 1 cut(s) 412
BfaI CTAG 1 cut(s) 587
BfmI CTRYAG 1 cut(s) 66
BfuI GTATCC 1 cut(s) 412
BglII AGATCT 1 cut(s) 412
BisI GCNGC 1 cut(s) 540
BlsI GCNGC 1 cut(s) 541
Bme1390I CCNGG 1 cut(s) 291
BmeRI GACNNNNNGTC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 522
BpmI CTGGAG 1 cut(s) 63
BpuEI CTTGAG 4 cut(s) 111, 317, 401, 410
BsaJI CCNNGG 2 cut(s) 289, 290
Bse1I ACTGG 3 cut(s) 51, 398, 630
Bse3DI GCAATG 1 cut(s) 616
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 289, 290
BseGI GGATG 2 cut(s) 40, 513
BseMI GCAATG 1 cut(s) 616
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 3 cut(s) 51, 398, 630
BseXI GCAGC 1 cut(s) 526
BseYI CCCAGC 1 cut(s) 405
BsgI GTGCAG 1 cut(s) 348
BshFI GGCC 1 cut(s) 244
BslFI GGGAC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 412
BspACI CCGC 2 cut(s) 517, 542
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 616
BsrI ACTGG 3 cut(s) 51, 398, 630
BssECI CCNNGG 2 cut(s) 289, 290
BssMI GATC 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 2 cut(s) 40, 513
BstKTI GATC 1 cut(s) 415
BstMBI GATC 1 cut(s) 412
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 526
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 1 cut(s) 244
BtsCI GGATG 2 cut(s) 40, 513
BtsIMutI CAGTG 1 cut(s) 384
CaiI CAGNNNCTG 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 242
CseI GACGC 1 cut(s) 78
Csp6I GTAC 5 cut(s) 208, 238, 318, 433, 459
CviAII CATG 4 cut(s) 26, 199, 249, 595
CviQI GTAC 5 cut(s) 208, 238, 318, 433, 459
DdeI CTNAG 1 cut(s) 155
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
DriI GACNNNNNGTC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 179
Eam1105I GACNNNNNGTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 179
EciI GGCGGA 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 289
FaeI CATG 4 cut(s) 29, 202, 252, 598
FaqI GGGAC 1 cut(s) 88
FatI CATG 4 cut(s) 25, 198, 248, 594
FauNDI CATATG 1 cut(s) 463
Fnu4HI GCNGC 1 cut(s) 540
FokI GGATG 2 cut(s) 47, 500
Fsp4HI GCNGC 1 cut(s) 540
FspBI CTAG 1 cut(s) 587
GluI GCNGC 1 cut(s) 540
GsaI CCCAGC 1 cut(s) 409
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 1 cut(s) 244
HgaI GACGC 1 cut(s) 78
Hin1II CATG 4 cut(s) 29, 202, 252, 598
HinfI GANTC 1 cut(s) 560
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 94, 156, 565
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4V TGCA 3 cut(s) 313, 329, 609
HpyF3I CTNAG 1 cut(s) 155
Hsp92II CATG 4 cut(s) 29, 202, 252, 598
Kzo9I GATC 1 cut(s) 412
LmnI GCTCC 2 cut(s) 82, 544
Lsp1109I GCAGC 1 cut(s) 526
LweI GCATC 1 cut(s) 522
MaeI CTAG 1 cut(s) 587
MaeIII GTNAC 1 cut(s) 469
MalI GATC 1 cut(s) 414
MboI GATC 1 cut(s) 412
MboII GAAGA 6 cut(s) 52, 196, 266, 349, 511, 518
MflI RGATCY 1 cut(s) 412
MluCI AATT 1 cut(s) 356
MmeI TCCRAC 2 cut(s) 170, 555
MnlI CCTC 5 cut(s) 25, 103, 180, 190, 477
MseI TTAA 2 cut(s) 140, 278
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
NdeI CATATG 1 cut(s) 463
NdeII GATC 1 cut(s) 412
NlaIII CATG 4 cut(s) 29, 202, 252, 598
NlaIV GGNNCC 1 cut(s) 49
NspI RCATGY 1 cut(s) 29
PasI CCCWGGG 1 cut(s) 290
PciI ACATGT 1 cut(s) 25
PfeI GAWTC 1 cut(s) 560
PkrI GCNGC 1 cut(s) 541
PscI ACATGT 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 405
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 242
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 5 cut(s) 209, 239, 319, 434, 460
RsaNI GTAC 5 cut(s) 208, 238, 318, 433, 459
SaqAI TTAA 2 cut(s) 140, 278
SatI GCNGC 1 cut(s) 540
Sau3AI GATC 1 cut(s) 412
Sau96I GGNCC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 291
SetI ASST 7 cut(s) 24, 79, 114, 168, 172, 235, 549
SfaNI GCATC 1 cut(s) 522
SfcI CTRYAG 1 cut(s) 66
SmlI CTYRAG 4 cut(s) 126, 296, 416, 425
SmoI CTYRAG 4 cut(s) 126, 296, 416, 425
Sse9I AATT 1 cut(s) 356
SsiI CCGC 2 cut(s) 517, 542
SspMI CTAG 1 cut(s) 587
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 388
TaqI TCGA 1 cut(s) 182
TasI AATT 1 cut(s) 356
TatI WGTACW 2 cut(s) 317, 458
TfiI GAWTC 1 cut(s) 560
Tru1I TTAA 2 cut(s) 140, 278
Tru9I TTAA 2 cut(s) 140, 278
TscAI CASTG 1 cut(s) 391
TseI GCWGC 1 cut(s) 539
TspDTI ATGAA 1 cut(s) 215
TspRI CASTG 1 cut(s) 391
XceI RCATGY 1 cut(s) 29
XspI CTAG 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.