Rh7CG370300

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
46565529 .. 46565867
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG370300.1

Sequence Viewer

Length: 339 bp
ATGGTGCAAAGTACATCAAGTGCAGGATTGAAGATTTTGTATCAGGCACAATTAGATGGTGTGGAGTTGGTGGTAGACACTGTTGATTTACCAGTATCCCAGCAAGATCTCAAGTATCTCAAGGAGTACCACAAAATGTATTCGGTTATCAGTACATATGGAGTAACTCCACAAGAGAGGAAGTTGTTGGTGAAGATGGAAGAACGCATTCGCCAACGAGAACTTGAATATGCTGCGGAGCTCGGCAAGGGAGATTCTGATTTTGAGTTGGAAGAGGAACTAGCAAACATGGACATAGACTGCAATAACACTCATCAACAAACCAGTTCTCTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.79

Weight (kDa)

4.57

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 75
AciI CCGC 1 cut(s) 236
AfaI GTAC 3 cut(s) 13, 128, 154
AgsI TTSAA 2 cut(s) 31, 227
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw21I GWGCWC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 202
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 220
BccI CCATC 2 cut(s) 50, 190
BciVI GTATCC 1 cut(s) 106
BfaI CTAG 1 cut(s) 281
BfuI GTATCC 1 cut(s) 106
BglII AGATCT 1 cut(s) 106
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
BpuEI CTTGAG 2 cut(s) 95, 104
Bse1I ACTGG 2 cut(s) 92, 324
BseNI ACTGG 2 cut(s) 92, 324
BseXI GCAGC 1 cut(s) 220
BseYI CCCAGC 1 cut(s) 99
BsgI GTGCAG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 243
BsmI GAATGC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 1 cut(s) 236
BsrI ACTGG 2 cut(s) 92, 324
BssMI GATC 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 267
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuI GTATCC 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 78
Csp6I GTAC 3 cut(s) 12, 127, 153
CviAII CATG 1 cut(s) 289
CviJI RGCY 1 cut(s) 241
CviKI_1 RGCY 1 cut(s) 241
CviQI GTAC 3 cut(s) 12, 127, 153
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Ecl136II GAGCTC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 1 cut(s) 292
FaiI YATR 5 cut(s) 157, 159, 231, 290, 296
FatI CATG 1 cut(s) 288
FauNDI CATATG 1 cut(s) 157
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 1 cut(s) 234
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 281
GluI GCNGC 1 cut(s) 234
GsaI CCCAGC 1 cut(s) 103
Hin1II CATG 1 cut(s) 292
HinfI GANTC 1 cut(s) 254
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 259
Hpy8I GTNNAC 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 3 cut(s) 7, 23, 303
Hsp92II CATG 1 cut(s) 292
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 4 cut(s) 9, 29, 105, 113
Lsp1109I GCAGC 1 cut(s) 220
MaeI CTAG 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 163
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 4 cut(s) 43, 205, 212, 284
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 2 cut(s) 171, 268
MroXI GAANNNNTTC 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 207
NdeI CATATG 1 cut(s) 157
NdeII GATC 1 cut(s) 106
NlaIII CATG 1 cut(s) 292
NmeAIII GCCGAG 1 cut(s) 222
PctI GAATGC 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 243
PspFI CCCAGC 1 cut(s) 99
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 3 cut(s) 13, 128, 154
RsaNI GTAC 3 cut(s) 12, 127, 153
SacI GAGCTC 1 cut(s) 243
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 1 cut(s) 106
SduI GDGCHC 1 cut(s) 243
SetI ASST 1 cut(s) 243
SmlI CTYRAG 2 cut(s) 110, 119
SmoI CTYRAG 2 cut(s) 110, 119
Sse9I AATT 1 cut(s) 50
SsiI CCGC 1 cut(s) 236
SspMI CTAG 1 cut(s) 281
SstI GAGCTC 1 cut(s) 243
TaaI ACNGT 1 cut(s) 82
TasI AATT 1 cut(s) 50
TatI WGTACW 2 cut(s) 11, 152
TfiI GAWTC 1 cut(s) 254
TscAI CASTG 1 cut(s) 85
TseI GCWGC 1 cut(s) 233
TspRI CASTG 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.