pycom11g14070

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000560
Physical Location & Seq
Forward (+)
13866425 .. 13866792
368 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g14070.1

Sequence Viewer

Length: 327 bp
ATGACGAGGTCAAGTGCCGACAAAACTCATGAATCAAAGGTGTTATGTGACCATTGTAAAACACCAGTTGAACCTGGGAAGAGGACATCTTCAACACCACCAACGGCCCCTACGGCGTCATCAAAGGGATTAGATCGACGACGTCAAGTGTTCGATCGACTCGGCCCCCAAGTAAAGCCGAAAGAACAGACCTCGGTCAGGCGGCGTCTTGACTTCGGCGCACCTTTCTATAATGAAGATTATTACTCGCGCAATACCCACAGTTCGGGCTCGCCAGCTGATCGCAAAACTTTCAAGCCACCCAGGACATCGGATCAACGCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

109

Amino Acids

12.21

Weight (kDa)

10.02

Isoelectric Point (pI)

69.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 145
AccII CGCG 1 cut(s) 250
AciI CCGC 1 cut(s) 202
AclWI GGATC 1 cut(s) 321
AcyI GRCGYC 3 cut(s) 116, 142, 205
AfiI CCNNNNNNNGG 2 cut(s) 198, 265
AgsI TTSAA 3 cut(s) 71, 93, 295
AjnI CCWGG 2 cut(s) 73, 302
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
AlwI GGATC 1 cut(s) 321
AoxI GGCC 2 cut(s) 105, 163
ApeKI GCWGC 1 cut(s) 321
AspLEI GCGC 2 cut(s) 221, 252
AspS9I GGNCC 2 cut(s) 106, 164
BanII GRGCYC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 308
BceAI ACGGC 2 cut(s) 120, 129
BciT130I CCWGG 2 cut(s) 75, 304
BglI GCCNNNNNGGC 1 cut(s) 113
BisI GCNGC 2 cut(s) 203, 322
BlsI GCNGC 2 cut(s) 204, 323
Bme1390I CCNGG 2 cut(s) 75, 304
BmgT120I GGNCC 2 cut(s) 106, 164
BmiI GGNNCC 2 cut(s) 108, 166
BmrFI CCNGG 2 cut(s) 75, 304
BoxI GACNNNNGTC 1 cut(s) 194
BsaHI GRCGYC 3 cut(s) 116, 142, 205
BsaJI CCNNGG 3 cut(s) 74, 192, 302
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 265
Bse1I ACTGG 1 cut(s) 65
BseBI CCWGG 2 cut(s) 75, 304
BseDI CCNNGG 3 cut(s) 74, 192, 302
BseLI CCNNNNNNNGG 2 cut(s) 198, 265
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 250
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 2 cut(s) 107, 165
BsiEI CGRYCG 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 198, 265
BsnI GGCC 2 cut(s) 107, 165
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 4 cut(s) 133, 154, 280, 313
BspACI CCGC 1 cut(s) 202
BspANI GGCC 2 cut(s) 107, 165
BspFNI CGCG 1 cut(s) 250
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 2 cut(s) 108, 166
BspPI GGATC 1 cut(s) 321
BsrI ACTGG 1 cut(s) 65
BssECI CCNNGG 3 cut(s) 74, 192, 302
BssMI GATC 4 cut(s) 133, 154, 280, 313
BssNI GRCGYC 3 cut(s) 116, 142, 205
Bst2UI CCWGG 2 cut(s) 75, 304
Bst4CI ACNGT 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 3 cut(s) 116, 142, 205
BstC8I GCNNGC 2 cut(s) 272, 276
BstENI CCTNNNNNAGG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 250
BstHHI GCGC 2 cut(s) 221, 252
BstKTI GATC 4 cut(s) 136, 157, 283, 316
BstMBI GATC 4 cut(s) 133, 154, 280, 313
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 2 cut(s) 75, 304
BstPAI GACNNNNGTC 1 cut(s) 194
BstSCI CCNGG 2 cut(s) 73, 302
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 308
BsuRI GGCC 2 cut(s) 107, 165
Cac8I GCNNGC 2 cut(s) 272, 276
CciI TCATGA 1 cut(s) 28
CfoI GCGC 2 cut(s) 221, 252
Cfr13I GGNCC 2 cut(s) 106, 164
CseI GACGC 2 cut(s) 105, 194
CviAII CATG 1 cut(s) 29
CviJI RGCY 6 cut(s) 107, 165, 178, 270, 278, 298
CviKI_1 RGCY 6 cut(s) 107, 165, 178, 270, 278, 298
DpnI GATC 4 cut(s) 135, 156, 282, 315
DpnII GATC 4 cut(s) 133, 154, 280, 313
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 272
EcoNI CCTNNNNNAGG 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 73, 302
EcoT38I GRGCYC 1 cut(s) 272
FaeI CATG 1 cut(s) 32
FaiI YATR 3 cut(s) 30, 46, 231
FatI CATG 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 203, 322
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 2 cut(s) 203, 322
GlaI GCGC 2 cut(s) 220, 251
GluI GCNGC 2 cut(s) 203, 322
HaeIII GGCC 2 cut(s) 107, 165
HgaI GACGC 2 cut(s) 105, 194
HhaI GCGC 2 cut(s) 221, 252
Hin1I GRCGYC 3 cut(s) 116, 142, 205
Hin1II CATG 1 cut(s) 32
Hin6I GCGC 2 cut(s) 219, 250
HinP1I GCGC 2 cut(s) 219, 250
HinfI GANTC 2 cut(s) 32, 159
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 2 cut(s) 29, 209
Hpy99I CGWCG 2 cut(s) 141, 144
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpySE526I ACGT 1 cut(s) 142
Hsp92I GRCGYC 3 cut(s) 116, 142, 205
Hsp92II CATG 1 cut(s) 32
HspAI GCGC 2 cut(s) 219, 250
Kzo9I GATC 4 cut(s) 133, 154, 280, 313
LpnPI CCDG 7 cut(s) 60, 78, 87, 184, 288, 289, 316
Lsp1109I GCAGC 1 cut(s) 308
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 47
MalI GATC 4 cut(s) 135, 156, 282, 315
MboI GATC 4 cut(s) 133, 154, 280, 313
MboII GAAGA 3 cut(s) 81, 91, 248
MhlI GDGCHC 1 cut(s) 272
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 2 cut(s) 75, 202
MspA1I CMGCKG 1 cut(s) 278
MspR9I CCNGG 2 cut(s) 75, 304
MvaI CCWGG 2 cut(s) 75, 304
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 4 cut(s) 133, 154, 280, 313
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 2 cut(s) 108, 166
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 47
PagI TCATGA 1 cut(s) 28
PfeI GAWTC 1 cut(s) 32
PflFI GACNNNGTC 2 cut(s) 7, 141
PkrI GCNGC 2 cut(s) 204, 323
Ple19I CGATCG 1 cut(s) 157
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
PshAI GACNNNNGTC 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 73, 302
PspGI CCWGG 2 cut(s) 73, 302
PspN4I GGNNCC 2 cut(s) 108, 166
PspPI GGNCC 2 cut(s) 106, 164
PsyI GACNNNGTC 2 cut(s) 7, 141
PvuI CGATCG 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 278
SatI GCNGC 2 cut(s) 203, 322
Sau3AI GATC 4 cut(s) 133, 154, 280, 313
Sau96I GGNCC 2 cut(s) 106, 164
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 2 cut(s) 75, 304
SduI GDGCHC 1 cut(s) 272
SetI ASST 7 cut(s) 11, 42, 76, 145, 194, 226, 280
SsiI CCGC 1 cut(s) 202
StyD4I CCNGG 2 cut(s) 73, 302
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 145
TaqI TCGA 3 cut(s) 136, 153, 157
TaqII GACCGA 1 cut(s) 184
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 1 cut(s) 32
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 321
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 2 cut(s) 45, 249
Tth111I GACNNNGTC 2 cut(s) 7, 141
XagI CCTNNNNNAGG 1 cut(s) 196
ZraI GACGTC 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.