Rroxscaffold_2G00107520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000560
Physical Location & Seq
Forward (+)
31487730 .. 31491123
3394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00107520.1

Sequence Viewer

Length: 429 bp
ATGTTAAGAGATCACCGCATTGAGCCTTTATCCAAAACCCAAAAACGCCAGCAACAGGAACTTGCCTTGGCTAGAAGGTTGGCGTTGGAGAGAAAAGATCAAGAGATACAAAAGCAACTTGAGGATAGAAGCAACACGAAAGGTTCCGTGGATGGCAGGAGAGAGAGAATCGACAAAAGCCTCATGCTAATGATTGAGGTAGAAGAAGAACCAAAGTTTGAGAAGCCAACTAATGTTAGCTTTGAAGAAGACTTCATTATCCGTGATGAAGACCTCATTGACCGCGGCGGAAGCTTTAATAGCCGTGACCATGATGAAGATCTCATTGGCAGCGGAGGAAGCTTCAACACCGCGACCATGGTGAAGACCTCACCGGCCACCGTGAAGGAGGTGAGGTGGATGAAGGAGTTGTACCTTCATCATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.68

Weight (kDa)

5.87

Isoelectric Point (pI)

60.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 285, 353
AciI CCGC 6 cut(s) 16, 283, 285, 288, 333, 351
AcoI YGGCCR 1 cut(s) 375
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 2 cut(s) 245, 346
AjuI GAANNNNNNNTTGG 2 cut(s) 309, 341
AluBI AGCT 3 cut(s) 240, 294, 342
AluI AGCT 3 cut(s) 240, 294, 342
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 330
AsuHPI GGTGA 4 cut(s) 5, 363, 373, 403
BarI GAAGNNNNNNTAC 2 cut(s) 395, 427
BbsI GAAGAC 3 cut(s) 255, 276, 371
BbvI GCAGC 1 cut(s) 342
BccI CCATC 1 cut(s) 146
BceAI ACGGC 1 cut(s) 288
BfaI CTAG 1 cut(s) 72
BglII AGATCT 1 cut(s) 319
BisI GCNGC 2 cut(s) 286, 331
BlsI GCNGC 2 cut(s) 287, 332
BmiI GGNNCC 1 cut(s) 145
BpiI GAAGAC 3 cut(s) 255, 276, 371
BpuEI CTTGAG 1 cut(s) 140
BsaBI GATNNNNATC 1 cut(s) 318
BsaJI CCNNGG 4 cut(s) 66, 147, 283, 357
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse118I RCCGGY 1 cut(s) 373
Bse8I GATNNNNATC 1 cut(s) 318
BseDI CCNNGG 4 cut(s) 66, 147, 283, 357
BseGI GGATG 2 cut(s) 157, 405
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 342
Bsh1236I CGCG 2 cut(s) 285, 353
BshFI GGCC 1 cut(s) 377
BsiSI CCGG 1 cut(s) 374
BslI CCNNNNNNNGG 1 cut(s) 55
BsnI GGCC 1 cut(s) 377
Bsp143I GATC 3 cut(s) 10, 97, 319
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 6 cut(s) 16, 283, 285, 288, 333, 351
BspANI GGCC 1 cut(s) 377
BspFNI CGCG 2 cut(s) 285, 353
BspLI GGNNCC 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 373
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 4 cut(s) 66, 147, 283, 357
BssMI GATC 3 cut(s) 10, 97, 319
BssT1I CCWWGG 2 cut(s) 66, 357
Bst4CI ACNGT 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 50
BstDSI CCRYGG 3 cut(s) 147, 283, 357
BstF5I GGATG 2 cut(s) 157, 405
BstFNI CGCG 2 cut(s) 285, 353
BstKTI GATC 3 cut(s) 13, 100, 322
BstMBI GATC 3 cut(s) 10, 97, 319
BstMWI GCNNNNNNNGC 3 cut(s) 291, 300, 339
BstUI CGCG 2 cut(s) 285, 353
BstV1I GCAGC 1 cut(s) 342
BstV2I GAAGAC 3 cut(s) 255, 276, 371
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 1 cut(s) 377
BtgI CCRYGG 3 cut(s) 147, 283, 357
BtsCI GGATG 2 cut(s) 157, 405
Cac8I GCNNGC 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 373
Cfr42I CCGCGG 1 cut(s) 286
Csp6I GTAC 1 cut(s) 412
CviAII CATG 3 cut(s) 184, 311, 358
CviJI RGCY 9 cut(s) 25, 71, 180, 226, 240, 294, 303, 342, 377
CviKI_1 RGCY 9 cut(s) 25, 71, 180, 226, 240, 294, 303, 342, 377
CviQI GTAC 1 cut(s) 412
DpnI GATC 3 cut(s) 12, 99, 321
DpnII GATC 3 cut(s) 10, 97, 319
EaeI YGGCCR 1 cut(s) 375
EciI GGCGGA 1 cut(s) 303
Eco130I CCWWGG 2 cut(s) 66, 357
EcoT14I CCWWGG 2 cut(s) 66, 357
ErhI CCWWGG 2 cut(s) 66, 357
FaeI CATG 3 cut(s) 187, 314, 361
FaiI YATR 3 cut(s) 185, 312, 359
FatI CATG 3 cut(s) 183, 310, 357
Fnu4HI GCNGC 2 cut(s) 286, 331
FokI GGATG 2 cut(s) 164, 412
Fsp4HI GCNGC 2 cut(s) 286, 331
FspBI CTAG 1 cut(s) 72
GluI GCNGC 2 cut(s) 286, 331
HaeIII GGCC 1 cut(s) 377
HapII CCGG 1 cut(s) 374
Hin1II CATG 3 cut(s) 187, 314, 361
HindIII AAGCTT 2 cut(s) 292, 340
HinfI GANTC 1 cut(s) 168
HpaII CCGG 1 cut(s) 374
HphI GGTGA 4 cut(s) 5, 363, 373, 403
Hpy188III TCNNGA 1 cut(s) 101
HpyAV CCTTC 4 cut(s) 69, 379, 397, 425
HpyCH4III ACNGT 1 cut(s) 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 291, 300, 339
Hsp92II CATG 3 cut(s) 187, 314, 361
KspI CCGCGG 1 cut(s) 286
Kzo9I GATC 3 cut(s) 10, 97, 319
LpnPI CCDG 4 cut(s) 41, 62, 142, 387
Lsp1109I GCAGC 1 cut(s) 342
MaeI CTAG 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 305
MalI GATC 3 cut(s) 12, 99, 321
MboI GATC 3 cut(s) 10, 97, 319
MboII GAAGA 7 cut(s) 215, 218, 257, 260, 281, 329, 376
MflI RGATCY 1 cut(s) 319
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 8 cut(s) 115, 190, 191, 284, 329, 379, 382, 387
MseI TTAA 2 cut(s) 5, 297
MslI CAYNNNNRTG 1 cut(s) 188
MspA1I CMGCKG 2 cut(s) 285, 333
MspI CCGG 1 cut(s) 374
MvnI CGCG 2 cut(s) 285, 353
MwoI GCNNNNNNNGC 3 cut(s) 291, 300, 339
NcoI CCATGG 1 cut(s) 357
NdeII GATC 3 cut(s) 10, 97, 319
NlaIII CATG 3 cut(s) 187, 314, 361
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 168
PkrI GCNGC 2 cut(s) 287, 332
PspN4I GGNNCC 1 cut(s) 145
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 1 cut(s) 188
SacII CCGCGG 1 cut(s) 286
SaqAI TTAA 2 cut(s) 5, 297
SatI GCNGC 2 cut(s) 286, 331
Sau3AI GATC 3 cut(s) 10, 97, 319
Sfr303I CCGCGG 1 cut(s) 286
SgrBI CCGCGG 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SsiI CCGC 6 cut(s) 16, 283, 285, 288, 333, 351
SspMI CTAG 1 cut(s) 72
StyI CCWWGG 2 cut(s) 66, 357
TaaI ACNGT 1 cut(s) 382
TaqI TCGA 1 cut(s) 171
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 2 cut(s) 5, 297
Tru9I TTAA 2 cut(s) 5, 297
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 1 cut(s) 330
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 5 cut(s) 244, 282, 330, 407, 416
TspGWI ACGGA 2 cut(s) 136, 251
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.