RLG00000022649

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000560
Physical Location & Seq
Reverse (-)
6395400 .. 6396174
775 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022649

Sequence Viewer

Length: 594 bp
ATGAAAACCCCAGGGCCACTTGCAGAGGATGCGAAGAAAGGAACCCATTATGTTCCTGCTATCGAGAAAGCTCCAGCAACTGCATCTGAGAAACTATCCCTTGGAGTCAAGGAGAACTCTCAAGTTGAGAAGTTGAAAGTTGAAGTCCTGAGAAACAAGCTACCTCCTTTTTCCTCAAAAGGTTGGACTACCATGAAGGAGTACCACAAGATACATTCGGCCTTAGCTTTGTACGAGCCGACGTGGGAAGAACTAGATACTCTGAAAGCGTTAACAGAAACAGGGCTTGAGCCTTTAATGGTGCAAAGTACATCAAGTGCAGGTTTGAAGATTTTGTATCAGGCACAAATAGATGGTGTGGAGTTGGTAGCTGACATTGTGGATTTACCAGTATCCCAGCGAGATCTCAAGTATCTGAAGGAGTACCACAAAATCAAACTAGTTCCCTTGTGTGCGATGGAAAAGTTAACCAAGTACAGGCTAATGGAATTCCATATTGAAGATGAGCAGCCAATGATTAAGGTAGAAGAAGAACCAGAGTTTGAGGAGCCAACTGATGTTAGCTTTGAAGAAGACTTCGTTATCCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

198

Amino Acids

22.39

Weight (kDa)

4.96

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 311
AcsI RAATTY 1 cut(s) 488
AcuI CTGAAG 1 cut(s) 437
AfaI GTAC 5 cut(s) 203, 233, 310, 425, 476
AfiI CCNNNNNNNGG 1 cut(s) 477
AgsI TTSAA 5 cut(s) 136, 143, 328, 500, 569
AhlI ACTAGT 1 cut(s) 439
AjiI CACGTC 1 cut(s) 243
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 5 cut(s) 71, 160, 227, 371, 564
AluI AGCT 5 cut(s) 71, 160, 227, 371, 564
AlwNI CAGNNNCTG 1 cut(s) 80
AoxI GGCC 2 cut(s) 14, 219
ApeKI GCWGC 1 cut(s) 508
ApoI RAATTY 1 cut(s) 488
AspS9I GGNCC 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 579
BbvI GCAGC 1 cut(s) 520
BccI CCATC 2 cut(s) 347, 451
BciT130I CCWGG 1 cut(s) 12
BciVI GTATCC 1 cut(s) 403
BcuI ACTAGT 1 cut(s) 439
BfaI CTAG 2 cut(s) 254, 440
BfuAI ACCTGC 1 cut(s) 311
BfuI GTATCC 1 cut(s) 403
BglII AGATCT 1 cut(s) 403
BisI GCNGC 1 cut(s) 509
BlsI GCNGC 1 cut(s) 510
Bme1390I CCNGG 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 43, 549
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 2 cut(s) 19, 92
BpiI GAAGAC 1 cut(s) 579
BpmI CTGGAG 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 223
BpuEI CTTGAG 3 cut(s) 105, 308, 392
BsaJI CCNNGG 3 cut(s) 10, 11, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 477
Bse1I ACTGG 1 cut(s) 389
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 3 cut(s) 10, 11, 100
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 477
BseMII CTCAG 2 cut(s) 78, 140
BseNI ACTGG 1 cut(s) 389
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 1 cut(s) 520
BseYI CCCAGC 1 cut(s) 396
BsgI GTGCAG 1 cut(s) 339
BshFI GGCC 2 cut(s) 16, 221
BslI CCNNNNNNNGG 1 cut(s) 477
BsnI GGCC 2 cut(s) 16, 221
Bsp143I GATC 1 cut(s) 403
BspANI GGCC 2 cut(s) 16, 221
BspCNI CTCAG 2 cut(s) 79, 141
BspLI GGNNCC 2 cut(s) 43, 549
BspMI ACCTGC 1 cut(s) 311
BsrI ACTGG 1 cut(s) 389
BssECI CCNNGG 3 cut(s) 10, 11, 100
BssMI GATC 1 cut(s) 403
BssT1I CCWWGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 29
BstDEI CTNAG 3 cut(s) 87, 149, 223
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 1 cut(s) 406
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 520
BstV2I GAAGAC 1 cut(s) 579
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 2 cut(s) 16, 221
BtgZI GCGATG 1 cut(s) 470
BtrI CACGTC 1 cut(s) 243
BtsCI GGATG 1 cut(s) 34
BveI ACCTGC 1 cut(s) 311
CaiI CAGNNNCTG 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 5 cut(s) 202, 232, 309, 424, 475
CviAII CATG 1 cut(s) 193
CviQI GTAC 5 cut(s) 202, 232, 309, 424, 475
DdeI CTNAG 3 cut(s) 87, 149, 223
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 437
EcoRI GAATTC 1 cut(s) 488
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 1 cut(s) 196
FaiI YATR 3 cut(s) 51, 194, 495
FatI CATG 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 509
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 509
FspBI CTAG 2 cut(s) 254, 440
GluI GCNGC 1 cut(s) 509
GsaI CCCAGC 1 cut(s) 400
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 2 cut(s) 16, 221
Hin1II CATG 1 cut(s) 196
HincII GTYRAC 2 cut(s) 273, 468
HindII GTYRAC 2 cut(s) 273, 468
HinfI GANTC 1 cut(s) 105
HpaI GTTAAC 2 cut(s) 273, 468
Hpy166II GTNNAC 2 cut(s) 273, 468
Hpy188I TCNGA 3 cut(s) 88, 264, 417
Hpy188III TCNNGA 2 cut(s) 64, 148
Hpy8I GTNNAC 2 cut(s) 273, 468
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 190, 412
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 4 cut(s) 23, 83, 304, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 3 cut(s) 87, 149, 223
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 1 cut(s) 196
KspAI GTTAAC 2 cut(s) 273, 468
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 2 cut(s) 76, 547
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 2 cut(s) 19, 92
MaeI CTAG 2 cut(s) 254, 440
MaeII ACGT 1 cut(s) 242
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 8 cut(s) 46, 260, 340, 512, 539, 542, 581, 584
MflI RGATCY 1 cut(s) 403
MluCI AATT 1 cut(s) 488
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 4 cut(s) 19, 174, 184, 538
MseI TTAA 5 cut(s) 272, 296, 467, 519, 592
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 1 cut(s) 403
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 2 cut(s) 43, 549
PasI CCCWGGG 1 cut(s) 11
PkrI GCNGC 1 cut(s) 510
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 10
PspFI CCCAGC 1 cut(s) 396
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 43, 549
PspPI GGNCC 1 cut(s) 14
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 403
RsaI GTAC 5 cut(s) 203, 233, 310, 425, 476
RsaNI GTAC 5 cut(s) 202, 232, 309, 424, 475
SaqAI TTAA 5 cut(s) 272, 296, 467, 519, 592
SatI GCNGC 1 cut(s) 509
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 12
SfaNI GCATC 2 cut(s) 19, 92
SmlI CTYRAG 3 cut(s) 120, 287, 407
SmoI CTYRAG 3 cut(s) 120, 287, 407
SpeI ACTAGT 1 cut(s) 439
Sse9I AATT 1 cut(s) 488
SspMI CTAG 2 cut(s) 254, 440
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 1 cut(s) 100
TaiI ACGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 63
TasI AATT 1 cut(s) 488
TatI WGTACW 2 cut(s) 308, 474
Tru1I TTAA 5 cut(s) 272, 296, 467, 519, 592
Tru9I TTAA 5 cut(s) 272, 296, 467, 519, 592
TseI GCWGC 1 cut(s) 508
TspDTI ATGAA 2 cut(s) 17, 209
XapI RAATTY 1 cut(s) 488
XspI CTAG 2 cut(s) 254, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.