Rroxscaffold_2G00123420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000560
Physical Location & Seq
Reverse (-)
57259414 .. 57259866
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123420.1

Sequence Viewer

Length: 453 bp
ATGGCAAGCCGAGACGGAAAAAGCGTCCTCCAAGCCGACAGCGGGGCCATTGAAGAATTGAAGAAAGAGCAAGCCGGTCTCAATCAACGGTTGAAGGATGAGAAAATGGTAGAAGGTGCTGCCACGAATAATGGTAAGCAAGACGATTTTGGAGACGAGGGTGATGAGGAAGTCGATTATGGGGAAGAAGAGGAACAAGGTGACTATGATAATGAAGTTGGAATCGACTACGACATAGGAGATGACACAACTTTTGACATGGAAACCTTATCCCTATTTTACAAGGGCAAGGCCGCCTTTGGAAAAGGAGAAGGTAATATAATGGACATCAACATGGTTTATGTCCTACCTTCGAACTCAAAGCTCAACCATGTCGGTCAAATGAACCGATCGGCGACTTTGCTGCCGATCAACAACCTCGATTTGAGATTGATGAAGCCGGTGCCCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.49

Weight (kDa)

4.25

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 442
AciI CCGC 2 cut(s) 42, 294
AfiI CCNNNNNNNGG 2 cut(s) 42, 446
AgsI TTSAA 3 cut(s) 53, 61, 94
AluBI AGCT 1 cut(s) 364
AluI AGCT 1 cut(s) 364
Alw26I GTCTC 3 cut(s) 6, 83, 147
AoxI GGCC 2 cut(s) 45, 291
ApeKI GCWGC 2 cut(s) 119, 403
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AspS9I GGNCC 1 cut(s) 45
AsuC2I CCSGG 1 cut(s) 447
AsuHPI GGTGA 2 cut(s) 173, 212
AsuII TTCGAA 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 447
BanI GGYRCC 1 cut(s) 442
BbvI GCAGC 2 cut(s) 106, 390
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BcnI CCSGG 1 cut(s) 447
BcoDI GTCTC 3 cut(s) 6, 83, 147
BisI GCNGC 3 cut(s) 120, 294, 404
BlsI GCNGC 3 cut(s) 121, 295, 405
Bme1390I CCNGG 1 cut(s) 447
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 2 cut(s) 46, 444
BmrFI CCNGG 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 353
BpuMI CCSGG 1 cut(s) 447
BsaI GGTCTC 1 cut(s) 83
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 446
Bse118I RCCGGY 2 cut(s) 74, 439
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 2 cut(s) 42, 446
BseSI GKGCMC 1 cut(s) 447
BseXI GCAGC 2 cut(s) 106, 390
Bsh1285I CGRYCG 1 cut(s) 392
BshFI GGCC 2 cut(s) 47, 293
BshNI GGYRCC 1 cut(s) 442
BsiEI CGRYCG 1 cut(s) 392
BsiSI CCGG 3 cut(s) 75, 440, 447
BslI CCNNNNNNNGG 2 cut(s) 42, 446
BsmAI GTCTC 3 cut(s) 6, 83, 147
BsmBI CGTCTC 2 cut(s) 6, 147
BsnI GGCC 2 cut(s) 47, 293
Bso31I GGTCTC 1 cut(s) 83
Bsp119I TTCGAA 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 2 cut(s) 389, 408
BspACI CCGC 2 cut(s) 42, 294
BspANI GGCC 2 cut(s) 47, 293
BspLI GGNNCC 2 cut(s) 46, 444
BspT104I TTCGAA 1 cut(s) 353
BspT107I GGYRCC 1 cut(s) 442
BspTNI GGTCTC 1 cut(s) 83
BsrFI RCCGGY 2 cut(s) 74, 439
BssAI RCCGGY 2 cut(s) 74, 439
BssMI GATC 2 cut(s) 389, 408
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 183
BstBI TTCGAA 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 7, 72
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 2 cut(s) 392, 411
BstMAI GTCTC 3 cut(s) 6, 83, 147
BstMBI GATC 2 cut(s) 389, 408
BstMCI CGRYCG 1 cut(s) 392
BstSCI CCNGG 1 cut(s) 445
BstSLI GKGCMC 1 cut(s) 447
BstV1I GCAGC 2 cut(s) 106, 390
BsuRI GGCC 2 cut(s) 47, 293
BtsCI GGATG 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 7, 72
Cfr10I RCCGGY 2 cut(s) 74, 439
Cfr13I GGNCC 1 cut(s) 45
CseI GACGC 1 cut(s) 13
CviAII CATG 3 cut(s) 259, 334, 371
CviJI RGCY 7 cut(s) 9, 35, 47, 74, 293, 364, 439
CviKI_1 RGCY 7 cut(s) 9, 35, 47, 74, 293, 364, 439
DpnI GATC 2 cut(s) 391, 410
DpnII GATC 2 cut(s) 389, 408
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 83
Esp3I CGTCTC 2 cut(s) 6, 147
FaeI CATG 3 cut(s) 262, 337, 374
FaiI YATR 8 cut(s) 180, 207, 236, 260, 320, 335, 342, 372
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FatI CATG 3 cut(s) 258, 333, 370
FauI CCCGC 1 cut(s) 35
Fnu4HI GCNGC 3 cut(s) 120, 294, 404
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 3 cut(s) 120, 294, 404
GluI GCNGC 3 cut(s) 120, 294, 404
HaeIII GGCC 2 cut(s) 47, 293
HapII CCGG 3 cut(s) 75, 440, 447
HgaI GACGC 1 cut(s) 13
Hin1II CATG 3 cut(s) 262, 337, 374
HinfI GANTC 1 cut(s) 222
HpaII CCGG 3 cut(s) 75, 440, 447
HphI GGTGA 2 cut(s) 173, 212
HpyAV CCTTC 4 cut(s) 88, 107, 305, 360
HpyCH4III ACNGT 1 cut(s) 90
Hsp92II CATG 3 cut(s) 262, 337, 374
Kzo9I GATC 2 cut(s) 389, 408
LpnPI CCDG 1 cut(s) 88
Lsp1109I GCAGC 2 cut(s) 106, 390
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 391, 410
MboI GATC 2 cut(s) 389, 408
MboII GAAGA 4 cut(s) 65, 73, 197, 200
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 5 cut(s) 38, 151, 160, 184, 428
MslI CAYNNNNRTG 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 3 cut(s) 75, 440, 447
MspR9I CCNGG 1 cut(s) 447
NciI CCSGG 1 cut(s) 447
NdeII GATC 2 cut(s) 389, 408
NlaIII CATG 3 cut(s) 262, 337, 374
NlaIV GGNNCC 2 cut(s) 46, 444
NmeAIII GCCGAG 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 200
NspV TTCGAA 1 cut(s) 353
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PfeI GAWTC 1 cut(s) 222
PkrI GCNGC 3 cut(s) 121, 295, 405
Ple19I CGATCG 1 cut(s) 392
PspN4I GGNNCC 2 cut(s) 46, 444
PspPI GGNCC 1 cut(s) 45
PvuI CGATCG 1 cut(s) 392
RseI CAYNNNNRTG 1 cut(s) 332
SatI GCNGC 3 cut(s) 120, 294, 404
Sau3AI GATC 2 cut(s) 389, 408
Sau96I GGNCC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 447
SduI GDGCHC 1 cut(s) 447
SetI ASST 7 cut(s) 118, 202, 269, 316, 352, 366, 420
SfuI TTCGAA 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 332
Sse9I AATT 1 cut(s) 56
SsiI CCGC 2 cut(s) 42, 294
StyD4I CCNGG 1 cut(s) 445
TaaI ACNGT 1 cut(s) 90
TaqI TCGA 4 cut(s) 174, 225, 353, 420
TaqII GACCGA 1 cut(s) 365
TasI AATT 1 cut(s) 56
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 1 cut(s) 222
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 119, 403
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 3 cut(s) 228, 398, 449
TspGWI ACGGA 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.