Rroxscaffold_1G00059290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000560
Physical Location & Seq
Forward (+)
81296708 .. 81297182
475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00059290.1

Sequence Viewer

Length: 465 bp
ATGGATAAGACACCAAATGGAAAAGTCCCTACCATAAGAGTACCGAGAGGACGGGATCCGCCGTTCTCAAATCAAGATCCGGGGATGATGAAAAAATATCATAGGGTGTATTCGGCATTGGCAACTTATGGCCTAACCGAGGAGGAAAGCGCGATGATGAAAATGATCTGTCTTCGAGTCATACCTCATTGCGAGGATTCTAGCATCGGCTTAAAAATCGGTTATCGTGCAATGATGGAGAATTATAAACCGGAAGCCAATACCGATAACTTACCTATTTCGATGCCGACTCGACTTACCTCCGCACCTACCATAAACAACATCCAAACTGCTGAGATTTATGGATTCACGTCCGCCGAGAGCAAATTACTAGATAATTTGTCCAAATACCTGCGGGCTCGTGCAATCGAGTGGCAAGTAGAGACGAGAGAAGGCGTCCACCAAGCCGACAATCGGGGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.42

Weight (kDa)

8.53

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
Acc36I ACCTGC 1 cut(s) 399
AccII CGCG 1 cut(s) 152
AciI CCGC 4 cut(s) 59, 303, 354, 394
AclWI GGATC 3 cut(s) 50, 63, 71
AcyI GRCGYC 1 cut(s) 435
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 2 cut(s) 139, 453
AjiI CACGTC 1 cut(s) 351
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 3 cut(s) 50, 63, 71
AoxI GGCC 2 cut(s) 130, 457
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 457
AsuC2I CCSGG 1 cut(s) 81
BamHI GGATCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 400
BauI CACGAG 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 164
BccI CCATC 1 cut(s) 229
BceAI ACGGC 1 cut(s) 46
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 416
BfaI CTAG 2 cut(s) 201, 371
BfuAI ACCTGC 1 cut(s) 399
Bme1390I CCNGG 1 cut(s) 81
BmgBI CACGTC 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 2 cut(s) 57, 458
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 2 cut(s) 213, 273
BpiI GAAGAC 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 435
BsaJI CCNNGG 2 cut(s) 80, 138
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 453
Bse3DI GCAATG 2 cut(s) 187, 237
BseDI CCNNGG 2 cut(s) 80, 138
BseGI GGATG 2 cut(s) 90, 321
BseLI CCNNNNNNNGG 2 cut(s) 139, 453
BseMI GCAATG 2 cut(s) 187, 237
BseMII CTCAG 1 cut(s) 324
BseRI GAGGAG 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 152
BshFI GGCC 2 cut(s) 132, 459
BsiSI CCGG 2 cut(s) 80, 251
BslFI GGGAC 1 cut(s) 11
BslI CCNNNNNNNGG 2 cut(s) 139, 453
BsmAI GTCTC 1 cut(s) 416
BsmBI CGTCTC 1 cut(s) 416
BsmFI GGGAC 1 cut(s) 11
BsnI GGCC 2 cut(s) 132, 459
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 3 cut(s) 55, 76, 165
BspACI CCGC 4 cut(s) 59, 303, 354, 394
BspANI GGCC 2 cut(s) 132, 459
BspCNI CTCAG 1 cut(s) 325
BspFNI CGCG 1 cut(s) 152
BspLI GGNNCC 2 cut(s) 57, 458
BspMI ACCTGC 1 cut(s) 399
BspPI GGATC 3 cut(s) 50, 63, 71
BsrDI GCAATG 2 cut(s) 187, 237
BssECI CCNNGG 2 cut(s) 80, 138
BssMI GATC 3 cut(s) 55, 76, 165
BssNI GRCGYC 1 cut(s) 435
BssSI CACGAG 1 cut(s) 399
Bst2BI CACGAG 1 cut(s) 399
BstACI GRCGYC 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 333
BstENI CCTNNNNNAGG 1 cut(s) 137
BstF5I GGATG 2 cut(s) 90, 321
BstFNI CGCG 1 cut(s) 152
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 3 cut(s) 58, 79, 168
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 3 cut(s) 55, 76, 165
BstSCI CCNGG 1 cut(s) 79
BstUI CGCG 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 164
BstX2I RGATCY 2 cut(s) 55, 76
BstYI RGATCY 2 cut(s) 55, 76
BsuRI GGCC 2 cut(s) 132, 459
BtgZI GCGATG 1 cut(s) 167
BtrI CACGTC 1 cut(s) 351
BtsCI GGATG 2 cut(s) 90, 321
BveI ACCTGC 1 cut(s) 399
Cac8I GCNNGC 1 cut(s) 396
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 457
CseI GACGC 1 cut(s) 424
Csp6I GTAC 1 cut(s) 41
CviJI RGCY 6 cut(s) 132, 210, 257, 398, 446, 459
CviKI_1 RGCY 6 cut(s) 132, 210, 257, 398, 446, 459
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 1 cut(s) 333
DpnI GATC 3 cut(s) 57, 78, 167
DpnII GATC 3 cut(s) 55, 76, 165
EciI GGCGGA 2 cut(s) 48, 343
Eco24I GRGCYC 1 cut(s) 400
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 400
Esp3I CGTCTC 1 cut(s) 416
FaiI YATR 7 cut(s) 35, 102, 129, 182, 246, 314, 342
FaqI GGGAC 1 cut(s) 11
FauI CCCGC 1 cut(s) 387
FokI GGATG 2 cut(s) 97, 308
FriOI GRGCYC 1 cut(s) 400
FspBI CTAG 2 cut(s) 201, 371
GlaI GCGC 1 cut(s) 151
HaeIII GGCC 2 cut(s) 132, 459
HapII CCGG 2 cut(s) 80, 251
HgaI GACGC 1 cut(s) 424
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 435
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 4 cut(s) 177, 197, 289, 345
HpaII CCGG 2 cut(s) 80, 251
Hpy166II GTNNAC 1 cut(s) 439
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 439
HpyAV CCTTC 1 cut(s) 425
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 2 cut(s) 230, 404
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 1 cut(s) 350
Hsp92I GRCGYC 1 cut(s) 435
HspAI GCGC 1 cut(s) 150
Kzo9I GATC 3 cut(s) 55, 76, 165
LpnPI CCDG 3 cut(s) 93, 264, 404
LweI GCATC 2 cut(s) 213, 273
MaeI CTAG 2 cut(s) 201, 371
MaeII ACGT 1 cut(s) 350
MalI GATC 3 cut(s) 57, 78, 167
MboI GATC 3 cut(s) 55, 76, 165
MboII GAAGA 1 cut(s) 164
MflI RGATCY 2 cut(s) 55, 76
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 3 cut(s) 241, 365, 376
MlyI GAGTC 2 cut(s) 186, 283
MnlI CCTC 6 cut(s) 41, 133, 136, 187, 195, 310
MseI TTAA 1 cut(s) 212
MspI CCGG 2 cut(s) 80, 251
MspR9I CCNGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 152
NciI CCSGG 1 cut(s) 81
NdeII GATC 3 cut(s) 55, 76, 165
NlaIV GGNNCC 2 cut(s) 57, 458
NmeAIII GCCGAG 1 cut(s) 382
PfeI GAWTC 2 cut(s) 197, 345
PleI GAGTC 2 cut(s) 185, 283
PpsI GAGTC 2 cut(s) 185, 283
PsiI TTATAA 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 57, 458
PspPI GGNCC 1 cut(s) 457
PsuI RGATCY 2 cut(s) 55, 76
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 212
Sau3AI GATC 3 cut(s) 55, 76, 165
Sau96I GGNCC 1 cut(s) 457
SchI GAGTC 2 cut(s) 186, 283
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 1 cut(s) 400
SetI ASST 6 cut(s) 187, 277, 302, 310, 353, 393
SfaNI GCATC 2 cut(s) 213, 273
Sse9I AATT 3 cut(s) 241, 365, 376
SsiI CCGC 4 cut(s) 59, 303, 354, 394
SspMI CTAG 2 cut(s) 201, 371
StyD4I CCNGG 1 cut(s) 79
TaiI ACGT 1 cut(s) 353
TaqI TCGA 4 cut(s) 175, 281, 292, 408
TasI AATT 3 cut(s) 241, 365, 376
TfiI GAWTC 2 cut(s) 197, 345
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 104, 173
XagI CCTNNNNNAGG 1 cut(s) 137
XspI CTAG 2 cut(s) 201, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.