Rmu_sc0005994.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005994.1
OG0000560
Physical Location & Seq
Reverse (-)
28717 .. 29601
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005994.1_g000011.1.cds

Sequence Viewer

Length: 885 bp
atggataagacgccaaatggaaaagtccttaccataagagtactgagaggacagaatccgccattctcaaatcaagatctggggatgatgaaaaaatatcataggatgtattcagcattggccacttatagcctaactgaggaggaaagcgcgatgatgaaaatgttggaaaaggatctgtcttcagattcatacctcatcactgaggattctaggatcggcttaaaaatcagttatcaggcaataatggagaattgtaagctggaagccaatactgataactttcctatttctgatgctgacctgacttacctccgcacctaccataaacaacatccagctgctgagatttatggattcacgtccgccgagagcaaattactagataatttgtccaaatacctgcaggctcgtgcaatcgagtggcaagcagagacagagaaggcatccaccaagctgacaactggggccattgaagaattgaagaaagagcaagccagtctcaatcagcagttgaaggatgaagaaatggtagaaggtgctgccacgaacaatggtaagcaagatgattttggagacgagggtgatgaggaggtcgattatagggaagaagaggaacaaggtgactatgataatgaagctggaatcgactacgacataggagatgacacagcttttgacatggaaaccttatccccactttacaagggcgaggccacctttggaaaaggagaaggtaatacaatggacatcaacatggtttatgtcctaccttcagaactcaaagctcaaccagttcagtcaaatgaactgatcggcgactttgttgctgatcaacaacctcgatttaagattgatgaagccgttgcccaacaaatgaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

33.14

Weight (kDa)

4.37

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 411
AccII CGCG 1 cut(s) 152
AciI CCGC 3 cut(s) 59, 316, 366
AclWI GGATC 2 cut(s) 183, 224
AcoI YGGCCR 1 cut(s) 120
AcuI CTGAAG 2 cut(s) 168, 759
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 3 cut(s) 476, 484, 517
AjiI CACGTC 1 cut(s) 363
AluBI AGCT 6 cut(s) 262, 341, 457, 641, 674, 788
AluI AGCT 6 cut(s) 262, 341, 457, 641, 674, 788
Alw26I GTCTC 3 cut(s) 428, 506, 570
AlwI GGATC 2 cut(s) 183, 224
AlwNI CAGNNNCTG 1 cut(s) 344
AoxI GGCC 3 cut(s) 120, 468, 714
ApeKI GCWGC 2 cut(s) 341, 542
ArsI GACNNNNNNTTYG 2 cut(s) 659, 691
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 468
AsuHPI GGTGA 2 cut(s) 596, 635
BalI TGGCCA 1 cut(s) 122
BauI CACGAG 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 2 cut(s) 328, 529
BceAI ACGGC 1 cut(s) 848
BcgI CGANNNNNNTGC 2 cut(s) 809, 843
BclI TGATCA 1 cut(s) 832
BcoDI GTCTC 3 cut(s) 428, 506, 570
BfaI CTAG 2 cut(s) 213, 383
BfmI CTRYAG 1 cut(s) 404
BfuAI ACCTGC 1 cut(s) 411
BglII AGATCT 1 cut(s) 76
BisI GCNGC 2 cut(s) 342, 543
BlsI GCNGC 2 cut(s) 343, 544
BmcAI AGTACT 1 cut(s) 42
BmgBI CACGTC 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 468
BmiI GGNNCC 1 cut(s) 469
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 2 cut(s) 286, 455
BmuI ACTGGG 1 cut(s) 474
BpiI GAAGAC 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 3 cut(s) 469, 498, 794
BseGI GGATG 5 cut(s) 90, 111, 334, 446, 526
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 4 cut(s) 35, 129, 195, 336
BseNI ACTGG 3 cut(s) 469, 498, 794
BseRI GAGGAG 2 cut(s) 155, 605
BseXI GCAGC 2 cut(s) 328, 529
Bsh1236I CGCG 1 cut(s) 152
BshFI GGCC 3 cut(s) 122, 470, 716
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 3 cut(s) 428, 506, 570
BsmBI CGTCTC 1 cut(s) 570
BsnI GGCC 3 cut(s) 122, 470, 716
Bsp143I GATC 5 cut(s) 76, 175, 216, 813, 832
BspACI CCGC 3 cut(s) 59, 316, 366
BspANI GGCC 3 cut(s) 122, 470, 716
BspCNI CTCAG 4 cut(s) 36, 130, 196, 337
BspFNI CGCG 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 469
BspMAI CTGCAG 1 cut(s) 408
BspMI ACCTGC 1 cut(s) 411
BspPI GGATC 2 cut(s) 183, 224
BsrI ACTGG 3 cut(s) 469, 498, 794
BssMI GATC 5 cut(s) 76, 175, 216, 813, 832
BssNI GRCGYC 1 cut(s) 11
BssSI CACGAG 1 cut(s) 411
Bst2BI CACGAG 1 cut(s) 411
Bst6I CTCTTC 1 cut(s) 606
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 408, 429, 495
BstDEI CTNAG 4 cut(s) 44, 138, 204, 345
BstENI CCTNNNNNAGG 1 cut(s) 137
BstF5I GGATG 5 cut(s) 90, 111, 334, 446, 526
BstFNI CGCG 1 cut(s) 152
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 5 cut(s) 79, 178, 219, 816, 835
BstMAI GTCTC 3 cut(s) 428, 506, 570
BstMBI GATC 5 cut(s) 76, 175, 216, 813, 832
BstSFI CTRYAG 1 cut(s) 404
BstUI CGCG 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 328, 529
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 2 cut(s) 76, 175
BstYI RGATCY 2 cut(s) 76, 175
BsuRI GGCC 3 cut(s) 122, 470, 716
BtgZI GCGATG 1 cut(s) 167
BtrI CACGTC 1 cut(s) 363
BtsCI GGATG 5 cut(s) 90, 111, 334, 446, 526
BtsIMutI CAGTG 1 cut(s) 201
BveI ACCTGC 1 cut(s) 411
Cac8I GCNNGC 3 cut(s) 408, 429, 495
CaiI CAGNNNCTG 1 cut(s) 344
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 468
CseI GACGC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 41
CviAII CATG 2 cut(s) 682, 757
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 4 cut(s) 44, 138, 204, 345
DpnI GATC 5 cut(s) 78, 177, 218, 815, 834
DpnII GATC 5 cut(s) 76, 175, 216, 813, 832
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
EciI GGCGGA 2 cut(s) 48, 355
Eco57I CTGAAG 2 cut(s) 168, 759
EcoNI CCTNNNNNAGG 1 cut(s) 137
Esp3I CGTCTC 1 cut(s) 570
FaeI CATG 2 cut(s) 685, 760
FatI CATG 2 cut(s) 681, 756
FbaI TGATCA 1 cut(s) 832
Fnu4HI GCNGC 2 cut(s) 342, 543
FokI GGATG 5 cut(s) 97, 118, 321, 433, 533
Fsp4HI GCNGC 2 cut(s) 342, 543
FspBI CTAG 2 cut(s) 213, 383
GlaI GCGC 1 cut(s) 151
GluI GCNGC 2 cut(s) 342, 543
HaeIII GGCC 3 cut(s) 122, 470, 716
HgaI GACGC 1 cut(s) 19
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 2 cut(s) 685, 760
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 5 cut(s) 55, 188, 209, 357, 645
HphI GGTGA 2 cut(s) 596, 635
Hpy188I TCNGA 3 cut(s) 187, 295, 778
Hpy188III TCNNGA 1 cut(s) 74
HpyAV CCTTC 5 cut(s) 436, 511, 530, 728, 783
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 2 cut(s) 406, 416
HpyF3I CTNAG 4 cut(s) 44, 138, 204, 345
HpySE526I ACGT 1 cut(s) 362
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 685, 760
HspAI GCGC 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 832
Kzo9I GATC 5 cut(s) 76, 175, 216, 813, 832
Lsp1109I GCAGC 2 cut(s) 328, 529
LweI GCATC 2 cut(s) 286, 455
MaeI CTAG 2 cut(s) 213, 383
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 1 cut(s) 623
MalI GATC 5 cut(s) 78, 177, 218, 815, 834
MboI GATC 5 cut(s) 76, 175, 216, 813, 832
MboII GAAGA 6 cut(s) 174, 488, 496, 536, 620, 623
MflI RGATCY 2 cut(s) 76, 175
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 4 cut(s) 253, 377, 388, 479
MluNI TGGCCA 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 147
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
MseI TTAA 2 cut(s) 224, 849
MslI CAYNNNNRTG 1 cut(s) 755
Msp20I TGGCCA 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 341
MvnI CGCG 1 cut(s) 152
NdeII GATC 5 cut(s) 76, 175, 216, 813, 832
NlaIII CATG 2 cut(s) 685, 760
NlaIV GGNNCC 1 cut(s) 469
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 623
PfeI GAWTC 5 cut(s) 55, 188, 209, 357, 645
PkrI GCNGC 2 cut(s) 343, 544
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 1 cut(s) 468
PstI CTGCAG 1 cut(s) 408
PstNI CAGNNNCTG 1 cut(s) 344
PsuI RGATCY 2 cut(s) 76, 175
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 755
SaqAI TTAA 2 cut(s) 224, 849
SatI GCNGC 2 cut(s) 342, 543
Sau3AI GATC 5 cut(s) 76, 175, 216, 813, 832
Sau96I GGNCC 1 cut(s) 468
SbfI CCTGCAGG 1 cut(s) 408
ScaI AGTACT 1 cut(s) 42
SdaI CCTGCAGG 1 cut(s) 408
SfaNI GCATC 2 cut(s) 286, 455
SfcI CTRYAG 1 cut(s) 404
SmiMI CAYNNNNRTG 1 cut(s) 755
Sse8387I CCTGCAGG 1 cut(s) 408
Sse9I AATT 4 cut(s) 253, 377, 388, 479
SsiI CCGC 3 cut(s) 59, 316, 366
SspMI CTAG 2 cut(s) 213, 383
TaiI ACGT 1 cut(s) 365
TaqI TCGA 4 cut(s) 420, 597, 648, 844
TasI AATT 4 cut(s) 253, 377, 388, 479
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 5 cut(s) 55, 188, 209, 357, 645
Tru1I TTAA 2 cut(s) 224, 849
Tru9I TTAA 2 cut(s) 224, 849
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 623
TseI GCWGC 2 cut(s) 341, 542
Tsp45I GTSAC 1 cut(s) 623
TspDTI ATGAA 7 cut(s) 104, 173, 180, 537, 651, 822, 873
TspRI CASTG 1 cut(s) 208
XagI CCTNNNNNAGG 1 cut(s) 137
XspI CTAG 2 cut(s) 213, 383
ZrmI AGTACT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.