Rh3BG290100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000560
Physical Location & Seq
Reverse (-)
29064847 .. 29065134
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG290100.1

Sequence Viewer

Length: 288 bp
ATGTCAACAACAACCCCAGAGCCACTTGCAGAGGATGAGAAGAAAGGAACCATTTATGTTCCTGCTGCTACAGAGAAAGCTCCAGCAACTGCATCTGACAAGCTACCCCCAGGAGTCAAGGGGAACTCTCAAGTTGAGAAGTTAAAAGTTGAAGTCCTGAGAAACAAGCTACCTCCTTTTTCCTCGAAGAGTTGGACTACCATGAAGGAGTACCACATGACACATTCGGCTTTAGCTTTGTATGGGCCGACGTGGGAAGAACTTGATACTCTGAAGGCTTTAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.43

Weight (kDa)

6.73

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 212
AgsI TTSAA 1 cut(s) 152
AjiI CACGTC 1 cut(s) 252
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 4 cut(s) 80, 103, 169, 236
AluI AGCT 4 cut(s) 80, 103, 169, 236
AlwNI CAGNNNCTG 1 cut(s) 89
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 69
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 111
BmgBI CACGTC 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 52
BshFI GGCC 1 cut(s) 247
BsnI GGCC 1 cut(s) 247
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 40
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 247
BtrI CACGTC 1 cut(s) 252
BtsCI GGATG 1 cut(s) 40
CaiI CAGNNNCTG 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 211
CviAII CATG 2 cut(s) 202, 217
CviJI RGCY 8 cut(s) 22, 80, 103, 169, 230, 236, 247, 278
CviKI_1 RGCY 8 cut(s) 22, 80, 103, 169, 230, 236, 247, 278
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 109
FaeI CATG 2 cut(s) 205, 220
FaiI YATR 5 cut(s) 57, 203, 218, 243, 286
FatI CATG 2 cut(s) 201, 216
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 1 cut(s) 247
Hin1II CATG 2 cut(s) 205, 220
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 114
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 97, 273
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 2 cut(s) 199, 268
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 29, 92
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 251
Hsp92II CATG 2 cut(s) 205, 220
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 6 cut(s) 30, 75, 96, 96, 123, 170
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 101
MaeII ACGT 1 cut(s) 251
MboII GAAGA 3 cut(s) 52, 199, 269
MlyI GAGTC 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 3 cut(s) 25, 183, 193
MseI TTAA 2 cut(s) 143, 281
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
NlaIII CATG 2 cut(s) 205, 220
NlaIV GGNNCC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 245
PstNI CAGNNNCTG 1 cut(s) 89
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SaqAI TTAA 2 cut(s) 143, 281
SatI GCNGC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 245
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 1 cut(s) 111
SetI ASST 6 cut(s) 82, 105, 171, 175, 238, 254
SfaNI GCATC 1 cut(s) 101
SfcI CTRYAG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 109
TaiI ACGT 1 cut(s) 254
TaqI TCGA 1 cut(s) 185
Tru1I TTAA 2 cut(s) 143, 281
Tru9I TTAA 2 cut(s) 143, 281
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.