Rmu_sc0005177.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005177.1
OG0000560
Physical Location & Seq
Forward (+)
35787 .. 36419
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005177.1_g000013.1.cds

Sequence Viewer

Length: 633 bp
atgatggagaactgtaagatggaatccaacactgataacttgcccatttccgattctgaccttgcttaccttcgtacttaccataaacaacatctggctgctgagatgtatggattcacgtccgccgagaccaaattattggacaatttgtccaaatacctgctggctcgtgcaattgaatggcaggcagagacagaaaaggcatccaccaagctgacaactggggccattgaagaattaaagaaagagcaagccagtctcaatcagcagttgaaggatgaggaaatggtagaaggtgctgccacgaacaatggcaagcaagacgattttggagacgaaggtgatgaggaagtcaattatggggaagaggaggaacaaggtgactatgataatgaaactggaatcgactatgacataggagatgacacagcttttgacatagaaaccttatccccattttacaagggcgaggctgcctttggaaaaggagaagacaaacatgacggctttcttcgtggtcgattcatcagctcaatacaatgcattgcttggccgcgattggattcaccagaacatgtgtgtaccttcttccctgcatcaagttttgatcttctagcaaggcgacaaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.68

Weight (kDa)

4.34

Isoelectric Point (pI)

50.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 168
AccII CGCG 1 cut(s) 556
AciI CCGC 2 cut(s) 123, 554
AcoI YGGCCR 1 cut(s) 551
AfaI GTAC 2 cut(s) 76, 583
AflIII ACRYGT 1 cut(s) 574
AgsI TTSAA 3 cut(s) 179, 233, 274
AhdI GACNNNNNGTC 1 cut(s) 148
AjiI CACGTC 1 cut(s) 120
AluBI AGCT 3 cut(s) 214, 431, 531
AluI AGCT 3 cut(s) 214, 431, 531
Alw26I GTCTC 4 cut(s) 122, 185, 263, 327
AoxI GGCC 2 cut(s) 225, 551
ApeKI GCWGC 3 cut(s) 98, 299, 473
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 3 cut(s) 353, 392, 558
BauI CACGAG 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 498
BbvI GCAGC 3 cut(s) 85, 286, 460
BccI CCATC 1 cut(s) 13
BceAI ACGGC 1 cut(s) 520
BcoDI GTCTC 4 cut(s) 122, 185, 263, 327
BfaI CTAG 1 cut(s) 614
BfuAI ACCTGC 1 cut(s) 168
BisI GCNGC 4 cut(s) 99, 300, 474, 554
BlsI GCNGC 4 cut(s) 100, 301, 475, 555
BmeRI GACNNNNNGTC 1 cut(s) 148
BmgBI CACGTC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 226
BmrI ACTGGG 1 cut(s) 231
BmsI GCATC 2 cut(s) 212, 605
BmuI ACTGGG 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 122
Bse1I ACTGG 3 cut(s) 226, 255, 403
Bse3DI GCAATG 1 cut(s) 543
BseGI GGATG 2 cut(s) 203, 283
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 3 cut(s) 226, 255, 403
BseRI GAGGAG 1 cut(s) 383
BseXI GCAGC 3 cut(s) 85, 286, 460
Bsh1236I CGCG 1 cut(s) 556
BshFI GGCC 2 cut(s) 227, 553
BsmAI GTCTC 4 cut(s) 122, 185, 263, 327
BsmBI CGTCTC 1 cut(s) 327
BsnI GGCC 2 cut(s) 227, 553
Bso31I GGTCTC 1 cut(s) 122
Bsp143I GATC 1 cut(s) 607
BspACI CCGC 2 cut(s) 123, 554
BspANI GGCC 2 cut(s) 227, 553
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 1 cut(s) 556
BspLI GGNNCC 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 543
BsrI ACTGG 3 cut(s) 226, 255, 403
BssMI GATC 1 cut(s) 607
BssSI CACGAG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 360
BstC8I GCNNGC 4 cut(s) 165, 186, 252, 317
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 2 cut(s) 203, 283
BstFNI CGCG 1 cut(s) 556
BstKTI GATC 1 cut(s) 610
BstMAI GTCTC 4 cut(s) 122, 185, 263, 327
BstMBI GATC 1 cut(s) 607
BstNSI RCATGY 1 cut(s) 578
BstUI CGCG 1 cut(s) 556
BstV1I GCAGC 3 cut(s) 85, 286, 460
BstV2I GAAGAC 1 cut(s) 498
BstXI CCANNNNNNTGG 1 cut(s) 139
BsuRI GGCC 2 cut(s) 227, 553
BtrI CACGTC 1 cut(s) 120
BtsCI GGATG 2 cut(s) 203, 283
BtsIMutI CAGTG 1 cut(s) 30
BveI ACCTGC 1 cut(s) 168
Cac8I GCNNGC 4 cut(s) 165, 186, 252, 317
Cfr13I GGNCC 1 cut(s) 225
Csp6I GTAC 2 cut(s) 75, 582
CviAII CATG 2 cut(s) 500, 575
CviQI GTAC 2 cut(s) 75, 582
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 609
DpnII GATC 1 cut(s) 607
DriI GACNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 551
Eam1104I CTCTTC 1 cut(s) 360
Eam1105I GACNNNNNGTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 360
EciI GGCGGA 1 cut(s) 112
Eco31I GGTCTC 1 cut(s) 122
EcoT22I ATGCAT 1 cut(s) 545
Esp3I CGTCTC 1 cut(s) 327
FaeI CATG 2 cut(s) 503, 578
FaiI YATR 9 cut(s) 84, 111, 360, 387, 411, 416, 440, 501, 576
FatI CATG 2 cut(s) 499, 574
Fnu4HI GCNGC 4 cut(s) 99, 300, 474, 554
FokI GGATG 2 cut(s) 190, 290
Fsp4HI GCNGC 4 cut(s) 99, 300, 474, 554
FspBI CTAG 1 cut(s) 614
GluI GCNGC 4 cut(s) 99, 300, 474, 554
HaeIII GGCC 2 cut(s) 227, 553
Hin1II CATG 2 cut(s) 503, 578
HinfI GANTC 6 cut(s) 23, 53, 114, 402, 522, 563
HphI GGTGA 3 cut(s) 353, 392, 558
Hpy166II GTNNAC 1 cut(s) 582
Hpy188I TCNGA 2 cut(s) 52, 58
Hpy8I GTNNAC 1 cut(s) 582
HpyAV CCTTC 5 cut(s) 80, 268, 287, 332, 595
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 3 cut(s) 173, 543, 596
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 2 cut(s) 503, 578
Kzo9I GATC 1 cut(s) 607
LpnPI CCDG 9 cut(s) 80, 149, 170, 173, 207, 268, 384, 582, 606
Lsp1109I GCAGC 3 cut(s) 85, 286, 460
LweI GCATC 2 cut(s) 212, 605
MaeI CTAG 1 cut(s) 614
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 380
MalI GATC 1 cut(s) 609
MboI GATC 1 cut(s) 607
MboII GAAGA 6 cut(s) 245, 377, 503, 503, 580, 602
MfeI CAATTG 1 cut(s) 174
MluCI AATT 6 cut(s) 134, 145, 174, 236, 355, 628
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 5 cut(s) 274, 340, 361, 364, 463
Mph1103I ATGCAT 1 cut(s) 545
MseI TTAA 1 cut(s) 239
MunI CAATTG 1 cut(s) 174
MvnI CGCG 1 cut(s) 556
NdeII GATC 1 cut(s) 607
NlaIII CATG 2 cut(s) 503, 578
NlaIV GGNNCC 1 cut(s) 226
NmeAIII GCCGAG 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 380
NsiI ATGCAT 1 cut(s) 545
NspI RCATGY 1 cut(s) 578
PciI ACATGT 1 cut(s) 574
PfeI GAWTC 6 cut(s) 23, 53, 114, 402, 522, 563
PkrI GCNGC 4 cut(s) 100, 301, 475, 555
PscI ACATGT 1 cut(s) 574
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 225
RsaI GTAC 2 cut(s) 76, 583
RsaNI GTAC 2 cut(s) 75, 582
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 4 cut(s) 99, 300, 474, 554
Sau3AI GATC 1 cut(s) 607
Sau96I GGNCC 1 cut(s) 225
SfaNI GCATC 2 cut(s) 212, 605
Sse9I AATT 6 cut(s) 134, 145, 174, 236, 355, 628
SsiI CCGC 2 cut(s) 123, 554
SspMI CTAG 1 cut(s) 614
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 122
TaqI TCGA 2 cut(s) 405, 520
TasI AATT 6 cut(s) 134, 145, 174, 236, 355, 628
TauI GCSGC 1 cut(s) 556
TfiI GAWTC 6 cut(s) 23, 53, 114, 402, 522, 563
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 3 cut(s) 98, 299, 473
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 408, 514
TspRI CASTG 1 cut(s) 37
XceI RCATGY 1 cut(s) 578
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 1 cut(s) 614
Zsp2I ATGCAT 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.