Rmu_sc0009027.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009027.1
OG0000560
Physical Location & Seq
Forward (+)
1727 .. 2412
686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009027.1_g000002.1.cds

Sequence Viewer

Length: 399 bp
atgcaaagggaagtggcggccgcaagccagcaagggtcagaagggcaggaagtcagacgctctactgaagcagataacaaagaagcccctataataagggaggactttcataaggattcaggagaacctatggaacttgagaccatcggtgatcattttgaaaatgtccttagcttcccaaagctaccccatctacggtttacagaaggaggggttaaggaaacctatggcataacgccagaagaggcccggctcgcaagggaacttgatggttatttagaaaagagagactttgcgactgaagagcaagcgaaagccgatgccaaagctaaggatattgaacaacagaaggaagtgcaaaaggcggctatggataagtcgccaaatggaaaagtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.83

Weight (kDa)

4.91

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 17, 21, 365
AcoI YGGCCR 1 cut(s) 18
AcuI CTGAAG 2 cut(s) 87, 321
AfiI CCNNNNNNNGG 1 cut(s) 195
AgsI TTSAA 2 cut(s) 161, 341
AluBI AGCT 3 cut(s) 174, 184, 329
AluI AGCT 3 cut(s) 174, 184, 329
Alw26I GTCTC 2 cut(s) 134, 282
AoxI GGCC 2 cut(s) 18, 246
AspS9I GGNCC 1 cut(s) 247
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 161
BccI CCATC 3 cut(s) 152, 198, 263
BclI TGATCA 1 cut(s) 151
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 2 cut(s) 134, 282
BisI GCNGC 3 cut(s) 18, 21, 366
BlsI GCNGC 3 cut(s) 19, 22, 367
Bme1390I CCNGG 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 250
BmsI GCATC 1 cut(s) 310
Bpu10I CCTNAGC 2 cut(s) 170, 330
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 250
BsaI GGTCTC 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 195
BseX3I CGGCCG 1 cut(s) 18
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 2 cut(s) 20, 248
BsiEI CGRYCG 1 cut(s) 21
BsiSI CCGG 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 2 cut(s) 134, 282
BsnI GGCC 2 cut(s) 20, 248
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 3 cut(s) 17, 21, 365
BspANI GGCC 2 cut(s) 20, 248
BspQI GCTCTTC 1 cut(s) 297
BspTNI GGTCTC 1 cut(s) 134
BssMI GATC 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 198
Bst6I CTCTTC 2 cut(s) 237, 297
BstC8I GCNNGC 4 cut(s) 25, 29, 255, 309
BstDEI CTNAG 2 cut(s) 170, 330
BstKTI GATC 1 cut(s) 154
BstMAI GTCTC 2 cut(s) 134, 282
BstMBI GATC 1 cut(s) 151
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 248
BstZI CGGCCG 1 cut(s) 18
BsuRI GGCC 2 cut(s) 20, 248
Cac8I GCNNGC 4 cut(s) 25, 29, 255, 309
CciNI GCGGCCGC 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 247
CseI GACGC 1 cut(s) 66
DdeI CTNAG 2 cut(s) 170, 330
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 18
EagI CGGCCG 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 237, 297
EarI CTCTTC 2 cut(s) 237, 297
EclXI CGGCCG 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 134
Eco52I CGGCCG 1 cut(s) 18
Eco57I CTGAAG 2 cut(s) 87, 321
FaiI YATR 6 cut(s) 92, 111, 131, 228, 233, 371
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 3 cut(s) 18, 21, 366
Fsp4HI GCNGC 3 cut(s) 18, 21, 366
GluI GCNGC 3 cut(s) 18, 21, 366
HaeIII GGCC 2 cut(s) 20, 248
HapII CCGG 1 cut(s) 250
HgaI GACGC 1 cut(s) 66
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 250
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 2 cut(s) 40, 56
Hpy188III TCNNGA 1 cut(s) 120
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 3 cut(s) 35, 200, 343
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 4, 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 2 cut(s) 170, 330
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 1 cut(s) 151
LguI GCTCTTC 1 cut(s) 297
LpnPI CCDG 5 cut(s) 32, 41, 105, 252, 263
LweI GCATC 1 cut(s) 310
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 2 cut(s) 254, 314
MnlI CCTC 3 cut(s) 94, 203, 238
MseI TTAA 1 cut(s) 216
MspI CCGG 1 cut(s) 250
MspR9I CCNGG 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 254
NciI CCSGG 1 cut(s) 250
NdeII GATC 1 cut(s) 151
NotI GCGGCCGC 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 3 cut(s) 19, 22, 367
PspPI GGNCC 1 cut(s) 247
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 3 cut(s) 18, 21, 366
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 247
ScrFI CCNGG 1 cut(s) 250
SetI ASST 5 cut(s) 130, 176, 186, 227, 331
SfaNI GCATC 1 cut(s) 310
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SsiI CCGC 3 cut(s) 17, 21, 365
StyD4I CCNGG 1 cut(s) 248
TaaI ACNGT 1 cut(s) 198
TauI GCSGC 3 cut(s) 20, 23, 368
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.