Rh2AG172600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000560
Physical Location & Seq
Forward (+)
16426631 .. 16427677
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG172600.1

Sequence Viewer

Length: 462 bp
ATGAAACGATATCATAAGAAGCACTTAGCTATCAAGCTTTATGGTTTGCTTGAAGAGGAGGAAAGACTGTTTTTAGAATCATCTACGGATGAAGTCTTCTTGGCACAGCCCAGTATTAGCCGAGGTTTAAAAGCTACGTTCCAGGTAGCATGGGAAAGTTCATCTCCAACAGTCTGCACACCGGAGGATAGATCAGCCCTACCAGTGTCTGAGGAAGACTTTTTGTATTTAACAGAGTACCACTGGCGCTATTCAGCTGAGGAGTTATACGACCTTATTGAGGAAGAAGAAGAACTGGCAGATGCGTTTGATCGATACACCTCCCAGAAGAAGAGCGAGGCAGGGATAAAAGCCAAAGATAATTCCCGATCTGAGCAGATCAAGAGGGTGACAAGTGCAGTGAGGATTTTGCTGAGGGTCAGGCTTTCGAAGGAGATGCAGAGTTTAACAATCATGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.79

Weight (kDa)

5.23

Isoelectric Point (pI)

73.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 1 cut(s) 53
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 4 cut(s) 29, 37, 134, 257
AluI AGCT 4 cut(s) 29, 37, 134, 257
AlwNI CAGNNNCTG 1 cut(s) 209
AspLEI GCGC 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 400
AsuII TTCGAA 1 cut(s) 428
BbsI GAAGAC 2 cut(s) 88, 222
BbvCI CCTCAGC 2 cut(s) 258, 413
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 1 cut(s) 143
BfaI CTAG 1 cut(s) 460
BfoI RGCGCY 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 143
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 2 cut(s) 292, 426
BmuI ACTGGG 1 cut(s) 105
BpiI GAAGAC 2 cut(s) 88, 222
Bpu10I CCTNAGC 2 cut(s) 258, 413
Bpu14I TTCGAA 1 cut(s) 428
Bsa29I ATCGAT 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 121
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 4 cut(s) 111, 203, 248, 300
BseBI CCWGG 1 cut(s) 143
BseCI ATCGAT 1 cut(s) 313
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 4 cut(s) 201, 249, 363, 404
BseNI ACTGG 4 cut(s) 111, 203, 248, 300
BseRI GAGGAG 2 cut(s) 71, 275
BsgI GTGCAG 2 cut(s) 160, 417
BshVI ATCGAT 1 cut(s) 313
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 280
Bsp119I TTCGAA 1 cut(s) 428
Bsp143I GATC 4 cut(s) 191, 310, 368, 378
BspCNI CTCAG 4 cut(s) 202, 250, 364, 405
BspDI ATCGAT 1 cut(s) 313
BspQI GCTCTTC 1 cut(s) 326
BspT104I TTCGAA 1 cut(s) 428
BsrI ACTGG 4 cut(s) 111, 203, 248, 300
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 4 cut(s) 191, 310, 368, 378
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 69, 172
Bst6I CTCTTC 2 cut(s) 48, 326
BstBI TTCGAA 1 cut(s) 428
BstDEI CTNAG 5 cut(s) 25, 210, 258, 372, 413
BstENI CCTNNNNNAGG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 4 cut(s) 194, 313, 371, 381
BstMBI GATC 4 cut(s) 191, 310, 368, 378
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstV2I GAAGAC 2 cut(s) 88, 222
Bsu15I ATCGAT 1 cut(s) 313
BsuTUI ATCGAT 1 cut(s) 313
BtsCI GGATG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 3 cut(s) 210, 241, 405
CaiI CAGNNNCTG 1 cut(s) 209
CfoI GCGC 1 cut(s) 249
ClaI ATCGAT 1 cut(s) 313
Csp6I GTAC 1 cut(s) 238
CviAII CATG 2 cut(s) 150, 454
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 5 cut(s) 25, 210, 258, 372, 413
DpnI GATC 4 cut(s) 193, 312, 370, 380
DpnII GATC 4 cut(s) 191, 310, 368, 378
DraI TTTAAA 1 cut(s) 129
Eam1104I CTCTTC 2 cut(s) 48, 326
EarI CTCTTC 2 cut(s) 48, 326
Eco32I GATATC 1 cut(s) 11
EcoNI CCTNNNNNAGG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 141
EcoRV GATATC 1 cut(s) 11
FaeI CATG 2 cut(s) 153, 457
FaiI YATR 5 cut(s) 15, 42, 151, 268, 455
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FatI CATG 2 cut(s) 149, 453
FokI GGATG 1 cut(s) 101
FspBI CTAG 1 cut(s) 460
GlaI GCGC 1 cut(s) 248
HaeII RGCGCY 1 cut(s) 250
HapII CCGG 1 cut(s) 182
HhaI GCGC 1 cut(s) 249
Hin1II CATG 2 cut(s) 153, 457
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 400
Hpy188I TCNGA 2 cut(s) 211, 373
Hpy188III TCNNGA 2 cut(s) 366, 382
HpyAV CCTTC 1 cut(s) 424
HpyCH4III ACNGT 2 cut(s) 69, 172
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 3 cut(s) 177, 398, 439
HpyF3I CTNAG 5 cut(s) 25, 210, 258, 372, 413
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 2 cut(s) 153, 457
HspAI GCGC 1 cut(s) 247
Kzo9I GATC 4 cut(s) 191, 310, 368, 378
LguI GCTCTTC 1 cut(s) 326
LweI GCATC 2 cut(s) 292, 426
MaeI CTAG 1 cut(s) 460
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 388
MalI GATC 4 cut(s) 193, 312, 370, 380
MboI GATC 4 cut(s) 191, 310, 368, 378
MboII GAAGA 8 cut(s) 65, 88, 227, 296, 299, 302, 340, 343
MluCI AATT 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 191
MseI TTAA 3 cut(s) 128, 230, 446
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
NdeII GATC 4 cut(s) 191, 310, 368, 378
NlaIII CATG 2 cut(s) 153, 457
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 388
NspV TTCGAA 1 cut(s) 428
PciSI GCTCTTC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PstNI CAGNNNCTG 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SapI GCTCTTC 1 cut(s) 326
SaqAI TTAA 3 cut(s) 128, 230, 446
Sau3AI GATC 4 cut(s) 191, 310, 368, 378
ScrFI CCNGG 1 cut(s) 143
SetI ASST 9 cut(s) 31, 39, 127, 136, 140, 147, 259, 276, 323
SfaNI GCATC 2 cut(s) 292, 426
SfuI TTCGAA 1 cut(s) 428
Sse9I AATT 1 cut(s) 361
SspMI CTAG 1 cut(s) 460
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 69, 172
TaiI ACGT 1 cut(s) 140
TaqI TCGA 2 cut(s) 313, 428
TasI AATT 1 cut(s) 361
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 3 cut(s) 128, 230, 446
Tru9I TTAA 3 cut(s) 128, 230, 446
TscAI CASTG 3 cut(s) 210, 248, 405
TseFI GTSAC 1 cut(s) 388
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 3 cut(s) 17, 105, 150
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 3 cut(s) 210, 248, 405
XagI CCTNNNNNAGG 1 cut(s) 278
XspI CTAG 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.