Rh1AG036500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000560
Physical Location & Seq
Forward (+)
6394115 .. 6394417
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG036500.1

Sequence Viewer

Length: 303 bp
ATGGACATAGACTGCAATGAAACTTATCAACAAACCAGTTCTCTTGTGTGCGATGGAAAAGCCAACCATGTACAGGCAGATGGAAAATTCCATATTGAAGAAGATCAGCCAATGATCGAGGTAGAAGAAGAACCAGAGTTTGAGAAGACAGCTGGTGTTAGCTATGAAGAAGACTTCATTATCCGTGATGAAGACCTCATTGGCCGCGGCGAAAGCTTCAATAGCGGCGACCATGGTGAAGACCTCACTGGCCACAGTGAAGGAGGTGAGGTGGATGAAGGAGTTGCATCGTCATCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.96

Weight (kDa)

4.05

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 207
AciI CCGC 3 cut(s) 205, 207, 225
AcoI YGGCCR 2 cut(s) 202, 250
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 98, 220
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 3 cut(s) 152, 162, 216
AluI AGCT 3 cut(s) 152, 162, 216
AoxI GGCC 2 cut(s) 202, 250
ApoI RAATTY 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 248, 278
BalI TGGCCA 1 cut(s) 252
BbsI GAAGAC 4 cut(s) 152, 177, 198, 246
BccI CCATC 2 cut(s) 47, 74
BisI GCNGC 3 cut(s) 205, 208, 226
BlsI GCNGC 3 cut(s) 206, 209, 227
BmsI GCATC 1 cut(s) 296
BpiI GAAGAC 4 cut(s) 152, 177, 198, 246
BsaJI CCNNGG 2 cut(s) 205, 232
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 36, 253
Bse3DI GCAATG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 205, 232
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 22
BseNI ACTGG 2 cut(s) 36, 253
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 2 cut(s) 204, 252
BslI CCNNNNNNNGG 1 cut(s) 73
BsnI GGCC 2 cut(s) 204, 252
Bsp1407I TGTACA 1 cut(s) 70
Bsp143I GATC 2 cut(s) 103, 114
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 3 cut(s) 205, 207, 225
BspANI GGCC 2 cut(s) 204, 252
BspFNI CGCG 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 70
BsrI ACTGG 2 cut(s) 36, 253
BssECI CCNNGG 2 cut(s) 205, 232
BssMI GATC 2 cut(s) 103, 114
BssT1I CCWWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 257
BstAUI TGTACA 1 cut(s) 70
BstDSI CCRYGG 2 cut(s) 205, 232
BstF5I GGATG 1 cut(s) 280
BstFNI CGCG 1 cut(s) 207
BstKTI GATC 2 cut(s) 106, 117
BstMBI GATC 2 cut(s) 103, 114
BstMWI GCNNNNNNNGC 2 cut(s) 213, 222
BstUI CGCG 1 cut(s) 207
BstV2I GAAGAC 4 cut(s) 152, 177, 198, 246
BsuRI GGCC 2 cut(s) 204, 252
BtgI CCRYGG 2 cut(s) 205, 232
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 246, 262
Cfr42I CCGCGG 1 cut(s) 208
Csp6I GTAC 1 cut(s) 71
CviAII CATG 2 cut(s) 68, 233
CviJI RGCY 7 cut(s) 62, 109, 152, 162, 204, 216, 252
CviKI_1 RGCY 7 cut(s) 62, 109, 152, 162, 204, 216, 252
CviQI GTAC 1 cut(s) 71
DpnI GATC 2 cut(s) 105, 116
DpnII GATC 2 cut(s) 103, 114
EaeI YGGCCR 2 cut(s) 202, 250
Eco130I CCWWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 2 cut(s) 71, 236
FaiI YATR 6 cut(s) 8, 69, 93, 165, 234, 301
FatI CATG 2 cut(s) 67, 232
Fnu4HI GCNGC 3 cut(s) 205, 208, 226
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 3 cut(s) 205, 208, 226
GluI GCNGC 3 cut(s) 205, 208, 226
HaeIII GGCC 2 cut(s) 204, 252
Hin1II CATG 2 cut(s) 71, 236
HindIII AAGCTT 1 cut(s) 214
HphI GGTGA 2 cut(s) 248, 278
HpyAV CCTTC 2 cut(s) 254, 272
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 2 cut(s) 15, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 222
Hsp92II CATG 2 cut(s) 71, 236
KspI CCGCGG 1 cut(s) 208
Kzo9I GATC 2 cut(s) 103, 114
LpnPI CCDG 5 cut(s) 49, 59, 138, 147, 234
LweI GCATC 1 cut(s) 296
MalI GATC 2 cut(s) 105, 116
MboI GATC 2 cut(s) 103, 114
MboII GAAGA 9 cut(s) 110, 113, 137, 140, 157, 179, 182, 203, 251
MlsI TGGCCA 1 cut(s) 252
MluCI AATT 1 cut(s) 86
MluNI TGGCCA 1 cut(s) 252
MnlI CCTC 5 cut(s) 112, 206, 254, 257, 262
Mox20I TGGCCA 1 cut(s) 252
MscI TGGCCA 1 cut(s) 252
Msp20I TGGCCA 1 cut(s) 252
MspA1I CMGCKG 2 cut(s) 152, 207
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 213, 222
NcoI CCATGG 1 cut(s) 232
NdeII GATC 2 cut(s) 103, 114
NlaIII CATG 2 cut(s) 71, 236
PkrI GCNGC 3 cut(s) 206, 209, 227
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SacII CCGCGG 1 cut(s) 208
SatI GCNGC 3 cut(s) 205, 208, 226
Sau3AI GATC 2 cut(s) 103, 114
SetI ASST 8 cut(s) 123, 154, 164, 198, 218, 246, 268, 273
SfaNI GCATC 1 cut(s) 296
Sfr303I CCGCGG 1 cut(s) 208
SgrBI CCGCGG 1 cut(s) 208
Sse9I AATT 1 cut(s) 86
SsiI CCGC 3 cut(s) 205, 207, 225
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 1 cut(s) 117
TasI AATT 1 cut(s) 86
TatI WGTACW 1 cut(s) 70
TauI GCSGC 3 cut(s) 207, 210, 228
TscAI CASTG 2 cut(s) 253, 262
TspDTI ATGAA 5 cut(s) 33, 166, 180, 204, 291
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 2 cut(s) 253, 262
XapI RAATTY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.