Rh2BG468400

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000560
Physical Location & Seq
Forward (+)
66153362 .. 66154267
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG468400.1

Sequence Viewer

Length: 906 bp
ATGTCAACAACACCCCCAGAGCTGCTTGCAGAGGGTGAGAAGAAAGTAACAGGTTATGTTCCTACTACAGAGAAAGCTGTAGCAACTACATCTAACAAGCTACCCCCAGGAGTTAAGGGGAAATCTCAAGTTGAGAAGTTGAAAGTTGAAGTCCTGAGAAACAAGCTACCTCCTTTTTCCTCGAAGAGTTGGACTACCATGAAGGAGTACCACAGGACTCATTCAGCTTTAGCTTTATATGGGCCGACGTGGGAAGAACTTGATACTATGAAGGCTTTAACAGAAAACCCAGGGCTTGAGCCTTTGATGGTGCAAAGTACATCAAGTGCAGGATTGAAGATTTTGTATCAGGCACAATTAGATGGTATAGAGTTGGTGGCGGACACTGTCGATTTACCAGTATCCCAGCGAGATCTCAAGTATCTCAAGGAGTACCACAAAATGTATTCGGTTATCAGTACATATGGAGTAACTCCACAAGAGAGGAAGTTGTTGGGGAAGATGGAAGAACGCATTCGCCAACGAGAACTTGAATATGCTGCGGAGCTCGGCAAGGGAGATTCTGATTTTGAGTTGGAAGAGGAACTAGCAAACATGGACATAGACTGCAATAACACTCATCAACAAACCAGTTCTCTTGTGTGCGATGGAAAAGCCAACCAAGTACCGGCTGATGGAAAATTCCATATTGAAGATGAGCAGCCAATGATTGAGGTAGAAGAAGAGCCAGAGTTTGAGAAGCCAACTGATGTTAGCTTTAAAGAAGACTTCATTATCTGTGATGAAGATCTCACTGGCCGCGGGGGAAGCTTCAATAGCCGCAACCATGATAAAGACCTCATTGGCCGCGGCAGAAGTTTCAATAGCCACGACCATGATGAAGACCTCACCGGCCACTGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

301

Amino Acids

33.85

Weight (kDa)

4.88

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 801, 849
AciI CCGC 7 cut(s) 380, 542, 799, 801, 820, 847, 849
AcoI YGGCCR 3 cut(s) 796, 844, 892
AcsI RAATTY 1 cut(s) 680
AfaI GTAC 5 cut(s) 209, 319, 434, 460, 666
AfiI CCNNNNNNNGG 2 cut(s) 667, 674
AgsI TTSAA 7 cut(s) 142, 149, 337, 533, 692, 814, 862
AjiI CACGTC 1 cut(s) 249
AjnI CCWGG 2 cut(s) 106, 289
AluBI AGCT 9 cut(s) 22, 77, 100, 166, 227, 233, 547, 756, 810
AluI AGCT 9 cut(s) 22, 77, 100, 166, 227, 233, 547, 756, 810
Alw21I GWGCWC 1 cut(s) 549
AoxI GGCC 4 cut(s) 242, 796, 844, 892
ApeKI GCWGC 3 cut(s) 22, 539, 700
ApoI RAATTY 1 cut(s) 680
Asp700I GAANNNNTTC 1 cut(s) 513
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 47, 880
BanII GRGCYC 1 cut(s) 549
BbsI GAAGAC 2 cut(s) 771, 888
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 3 cut(s) 9, 526, 712
BccI CCATC 5 cut(s) 301, 356, 496, 641, 668
BciT130I CCWGG 2 cut(s) 108, 291
BciVI GTATCC 1 cut(s) 412
BfaI CTAG 1 cut(s) 587
BfmI CTRYAG 2 cut(s) 66, 78
BfuI GTATCC 1 cut(s) 412
BglII AGATCT 2 cut(s) 412, 787
BisI GCNGC 7 cut(s) 23, 540, 701, 799, 820, 847, 850
BlsI GCNGC 7 cut(s) 24, 541, 702, 800, 821, 848, 851
Bme1390I CCNGG 2 cut(s) 108, 291
BmgBI CACGTC 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 242
BmrFI CCNGG 2 cut(s) 108, 291
BpiI GAAGAC 2 cut(s) 771, 888
BpuEI CTTGAG 4 cut(s) 111, 317, 401, 410
BsaBI GATNNNNATC 1 cut(s) 786
BsaJI CCNNGG 5 cut(s) 106, 289, 290, 799, 847
Bsc4I CCNNNNNNNGG 2 cut(s) 667, 674
Bse118I RCCGGY 2 cut(s) 667, 890
Bse1I ACTGG 3 cut(s) 398, 630, 799
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 2 cut(s) 108, 291
BseDI CCNNGG 5 cut(s) 106, 289, 290, 799, 847
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 2 cut(s) 667, 674
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 3 cut(s) 398, 630, 799
BseXI GCAGC 3 cut(s) 9, 526, 712
BseYI CCCAGC 1 cut(s) 405
BsgI GTGCAG 1 cut(s) 348
Bsh1236I CGCG 2 cut(s) 801, 849
BshFI GGCC 4 cut(s) 244, 798, 846, 894
BsiHKAI GWGCWC 1 cut(s) 549
BsiSI CCGG 2 cut(s) 668, 891
BslI CCNNNNNNNGG 2 cut(s) 667, 674
BsmI GAATGC 1 cut(s) 513
BsnI GGCC 4 cut(s) 244, 798, 846, 894
Bsp1286I GDGCHC 1 cut(s) 549
Bsp143I GATC 2 cut(s) 412, 787
BspACI CCGC 7 cut(s) 380, 542, 799, 801, 820, 847, 849
BspANI GGCC 4 cut(s) 244, 798, 846, 894
BspCNI CTCAG 1 cut(s) 147
BspFNI CGCG 2 cut(s) 801, 849
BspQI GCTCTTC 1 cut(s) 717
BsrFI RCCGGY 2 cut(s) 667, 890
BsrI ACTGG 3 cut(s) 398, 630, 799
BssAI RCCGGY 2 cut(s) 667, 890
BssECI CCNNGG 5 cut(s) 106, 289, 290, 799, 847
BssMI GATC 2 cut(s) 412, 787
Bst2UI CCWGG 2 cut(s) 108, 291
Bst4CI ACNGT 2 cut(s) 388, 899
Bst6I CTCTTC 3 cut(s) 179, 573, 717
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 155
BstDSI CCRYGG 2 cut(s) 799, 847
BstFNI CGCG 2 cut(s) 801, 849
BstKTI GATC 2 cut(s) 415, 790
BstMBI GATC 2 cut(s) 412, 787
BstMWI GCNNNNNNNGC 2 cut(s) 807, 816
BstNI CCWGG 2 cut(s) 108, 291
BstSCI CCNGG 2 cut(s) 106, 289
BstSFI CTRYAG 2 cut(s) 66, 78
BstUI CGCG 2 cut(s) 801, 849
BstV1I GCAGC 3 cut(s) 9, 526, 712
BstV2I GAAGAC 2 cut(s) 771, 888
BstX2I RGATCY 2 cut(s) 412, 787
BstYI RGATCY 2 cut(s) 412, 787
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 4 cut(s) 244, 798, 846, 894
BtgI CCRYGG 2 cut(s) 799, 847
BtgZI GCGATG 1 cut(s) 660
BtrI CACGTC 1 cut(s) 249
BtsIMutI CAGTG 3 cut(s) 384, 792, 895
Cac8I GCNNGC 1 cut(s) 27
Cfr10I RCCGGY 2 cut(s) 667, 890
Cfr13I GGNCC 1 cut(s) 242
Cfr42I CCGCGG 2 cut(s) 802, 850
Csp6I GTAC 5 cut(s) 208, 318, 433, 459, 665
CviAII CATG 4 cut(s) 199, 595, 827, 875
CviQI GTAC 5 cut(s) 208, 318, 433, 459, 665
DdeI CTNAG 1 cut(s) 155
DpnI GATC 2 cut(s) 414, 789
DpnII GATC 2 cut(s) 412, 787
DraI TTTAAA 1 cut(s) 760
EaeI YGGCCR 3 cut(s) 796, 844, 892
Eam1104I CTCTTC 3 cut(s) 179, 573, 717
EarI CTCTTC 3 cut(s) 179, 573, 717
EciI GGCGGA 1 cut(s) 395
Ecl136II GAGCTC 1 cut(s) 547
Eco24I GRGCYC 1 cut(s) 549
Eco53kI GAGCTC 1 cut(s) 547
EcoICRI GAGCTC 1 cut(s) 547
EcoRII CCWGG 2 cut(s) 106, 289
EcoT38I GRGCYC 1 cut(s) 549
FaeI CATG 4 cut(s) 202, 598, 830, 878
FatI CATG 4 cut(s) 198, 594, 826, 874
FauI CCCGC 1 cut(s) 794
FauNDI CATATG 1 cut(s) 463
Fnu4HI GCNGC 7 cut(s) 23, 540, 701, 799, 820, 847, 850
FriOI GRGCYC 1 cut(s) 549
Fsp4HI GCNGC 7 cut(s) 23, 540, 701, 799, 820, 847, 850
FspBI CTAG 1 cut(s) 587
GluI GCNGC 7 cut(s) 23, 540, 701, 799, 820, 847, 850
GsaI CCCAGC 1 cut(s) 409
HaeIII GGCC 4 cut(s) 244, 798, 846, 894
HapII CCGG 2 cut(s) 668, 891
Hin1II CATG 4 cut(s) 202, 598, 830, 878
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 808
HinfI GANTC 2 cut(s) 217, 560
HpaII CCGG 2 cut(s) 668, 891
HphI GGTGA 2 cut(s) 47, 880
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 565
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 196, 265
HpyCH4III ACNGT 2 cut(s) 388, 899
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 4 cut(s) 29, 313, 329, 609
HpyF10VI GCNNNNNNNGC 2 cut(s) 807, 816
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 4 cut(s) 202, 598, 830, 878
KspI CCGCGG 2 cut(s) 802, 850
Kzo9I GATC 2 cut(s) 412, 787
LguI GCTCTTC 1 cut(s) 717
LmnI GCTCC 1 cut(s) 544
Lsp1109I GCAGC 3 cut(s) 9, 526, 712
MaeI CTAG 1 cut(s) 587
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 2 cut(s) 46, 469
MalI GATC 2 cut(s) 414, 789
MboI GATC 2 cut(s) 412, 787
MflI RGATCY 2 cut(s) 412, 787
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 2 cut(s) 356, 680
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 2 cut(s) 170, 555
MnlI CCTC 8 cut(s) 25, 180, 190, 477, 574, 706, 848, 896
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 3 cut(s) 114, 278, 759
MslI CAYNNNNRTG 1 cut(s) 873
MspA1I CMGCKG 2 cut(s) 801, 849
MspI CCGG 2 cut(s) 668, 891
MspR9I CCNGG 2 cut(s) 108, 291
Mva1269I GAATGC 1 cut(s) 513
MvaI CCWGG 2 cut(s) 108, 291
MvnI CGCG 2 cut(s) 801, 849
MwoI GCNNNNNNNGC 2 cut(s) 807, 816
NdeI CATATG 1 cut(s) 463
NdeII GATC 2 cut(s) 412, 787
NlaIII CATG 4 cut(s) 202, 598, 830, 878
NmeAIII GCCGAG 1 cut(s) 528
PasI CCCWGGG 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 717
PctI GAATGC 1 cut(s) 513
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 1 cut(s) 560
PflFI GACNNNGTC 1 cut(s) 386
PkrI GCNGC 7 cut(s) 24, 541, 702, 800, 821, 848, 851
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp124BI GAGCTC 1 cut(s) 549
Psp6I CCWGG 2 cut(s) 106, 289
PspFI CCCAGC 1 cut(s) 405
PspGI CCWGG 2 cut(s) 106, 289
PspPI GGNCC 1 cut(s) 242
PsuI RGATCY 2 cut(s) 412, 787
PsyI GACNNNGTC 1 cut(s) 386
RsaI GTAC 5 cut(s) 209, 319, 434, 460, 666
RsaNI GTAC 5 cut(s) 208, 318, 433, 459, 665
RseI CAYNNNNRTG 1 cut(s) 873
SacI GAGCTC 1 cut(s) 549
SacII CCGCGG 2 cut(s) 802, 850
SapI GCTCTTC 1 cut(s) 717
SaqAI TTAA 3 cut(s) 114, 278, 759
SatI GCNGC 7 cut(s) 23, 540, 701, 799, 820, 847, 850
Sau3AI GATC 2 cut(s) 412, 787
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 2 cut(s) 108, 291
SduI GDGCHC 1 cut(s) 549
SfcI CTRYAG 2 cut(s) 66, 78
Sfr303I CCGCGG 2 cut(s) 802, 850
SgrBI CCGCGG 2 cut(s) 802, 850
SmiMI CAYNNNNRTG 1 cut(s) 873
SmlI CTYRAG 4 cut(s) 126, 296, 416, 425
SmoI CTYRAG 4 cut(s) 126, 296, 416, 425
Sse9I AATT 2 cut(s) 356, 680
SsiI CCGC 7 cut(s) 380, 542, 799, 801, 820, 847, 849
SspMI CTAG 1 cut(s) 587
SstI GAGCTC 1 cut(s) 549
StyD4I CCNGG 2 cut(s) 106, 289
TaaI ACNGT 2 cut(s) 388, 899
TaiI ACGT 1 cut(s) 251
TaqI TCGA 2 cut(s) 182, 390
TasI AATT 2 cut(s) 356, 680
TatI WGTACW 2 cut(s) 317, 458
TauI GCSGC 4 cut(s) 801, 822, 849, 852
TfiI GAWTC 1 cut(s) 560
Tru1I TTAA 3 cut(s) 114, 278, 759
Tru9I TTAA 3 cut(s) 114, 278, 759
TscAI CASTG 3 cut(s) 391, 799, 902
TseI GCWGC 3 cut(s) 22, 539, 700
TspDTI ATGAA 5 cut(s) 215, 284, 760, 798, 894
TspRI CASTG 3 cut(s) 391, 799, 902
Tth111I GACNNNGTC 1 cut(s) 386
XapI RAATTY 1 cut(s) 680
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.