Rroxscaffold_1G00015200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000560
Physical Location & Seq
Reverse (-)
18947337 .. 18948108
772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015200.1

Sequence Viewer

Length: 402 bp
ATGGATGGCGGGAGAGAGAAAATCAACAAAAGTCACATGGTAGTCGTCATCAAACAAGGAAATTTGATACAGATCCTCTTCTATGTCAACGACAACCCTGTGGCCACTTACGAGGATGAGAAGAAAGGAACCGATTATGTTTCCCATCGAGAAAGCTCCAAAGAATCGCATTTGACAATAACTCCACACGAGAGGAAGTTGTCGTTAAAGATGGAAGAATGCATTCGCCAACGAGAACTCGAGTACACCGCGGAGCCGGGAAAAGGAGATTTTGATTATGAGTTGGAAGAGGAACTAGCAAACATGGACATAGACTGCAATGAAACTCATCAACAAACCAGTTCTCTTGTGTGCGGTGGTAAAGCCAACCAAGTACCAAAGAGATGGAAAATTCCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.37

Weight (kDa)

5.38

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 251
AciI CCGC 4 cut(s) 9, 249, 251, 354
AclWI GGATC 1 cut(s) 67
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 2 cut(s) 61, 390
AfaI GTAC 2 cut(s) 245, 375
AfiI CCNNNNNNNGG 1 cut(s) 263
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
AlwI GGATC 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 1 cut(s) 102
ApoI RAATTY 2 cut(s) 61, 390
Asp700I GAANNNNTTC 1 cut(s) 222
AsuC2I CCSGG 1 cut(s) 258
AvaI CYCGRG 1 cut(s) 239
BalI TGGCCA 1 cut(s) 104
BauI CACGAG 1 cut(s) 188
BccI CCATC 3 cut(s) 153, 205, 378
BcnI CCSGG 1 cut(s) 258
BfaI CTAG 1 cut(s) 296
Bme1390I CCNGG 1 cut(s) 258
BmeT110I CYCGRG 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 130, 255
BmrFI CCNGG 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 249
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 325
Bse8I GATNNNNATC 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 2 cut(s) 10, 121
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMI GCAATG 1 cut(s) 325
BseNI ACTGG 1 cut(s) 339
Bsh1236I CGCG 1 cut(s) 251
BshFI GGCC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 263
BsmI GAATGC 2 cut(s) 222, 224
BsnI GGCC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 239
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 4 cut(s) 9, 249, 251, 354
BspANI GGCC 1 cut(s) 104
BspFNI CGCG 1 cut(s) 251
BspLI GGNNCC 2 cut(s) 130, 255
BspPI GGATC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 325
BsrI ACTGG 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 1 cut(s) 72
BssSI CACGAG 1 cut(s) 188
Bst2BI CACGAG 1 cut(s) 188
Bst6I CTCTTC 2 cut(s) 83, 282
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 10, 121
BstFNI CGCG 1 cut(s) 251
BstKTI GATC 1 cut(s) 75
BstMBI GATC 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 256
BstUI CGCG 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 72
BstXI CCANNNNNNTGG 1 cut(s) 384
BstYI RGATCY 1 cut(s) 72
BsuRI GGCC 1 cut(s) 104
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 2 cut(s) 10, 121
Cfr42I CCGCGG 1 cut(s) 252
Csp6I GTAC 2 cut(s) 244, 374
CviAII CATG 2 cut(s) 37, 304
CviJI RGCY 4 cut(s) 104, 156, 256, 365
CviKI_1 RGCY 4 cut(s) 104, 156, 256, 365
CviQI GTAC 2 cut(s) 244, 374
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 2 cut(s) 83, 282
EarI CTCTTC 2 cut(s) 83, 282
Eco88I CYCGRG 1 cut(s) 239
EcoT22I ATGCAT 1 cut(s) 224
FaeI CATG 2 cut(s) 40, 307
FaiI YATR 7 cut(s) 38, 84, 138, 279, 305, 311, 397
FatI CATG 2 cut(s) 36, 303
FauI CCCGC 1 cut(s) 2
FokI GGATG 2 cut(s) 17, 128
FspBI CTAG 1 cut(s) 296
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 257
Hin1II CATG 2 cut(s) 40, 307
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 1 cut(s) 164
HpaII CCGG 1 cut(s) 257
Hpy166II GTNNAC 2 cut(s) 88, 246
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 2 cut(s) 88, 246
HpyCH4V TGCA 2 cut(s) 222, 318
Hsp92II CATG 2 cut(s) 40, 307
KspI CCGCGG 1 cut(s) 252
Kzo9I GATC 1 cut(s) 72
LmnI GCTCC 2 cut(s) 161, 253
LpnPI CCDG 3 cut(s) 111, 270, 352
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 32
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 4 cut(s) 70, 133, 227, 299
MflI RGATCY 1 cut(s) 72
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 2 cut(s) 61, 390
MluNI TGGCCA 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 4 cut(s) 86, 106, 186, 283
Mox20I TGGCCA 1 cut(s) 104
Mph1103I ATGCAT 1 cut(s) 224
MroXI GAANNNNTTC 1 cut(s) 222
MscI TGGCCA 1 cut(s) 104
MseI TTAA 1 cut(s) 206
Msp20I TGGCCA 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 258
Mva1269I GAATGC 2 cut(s) 222, 224
MvnI CGCG 1 cut(s) 251
NciI CCSGG 1 cut(s) 258
NdeII GATC 1 cut(s) 72
NlaIII CATG 2 cut(s) 40, 307
NlaIV GGNNCC 2 cut(s) 130, 255
NmuCI GTSAC 1 cut(s) 32
NsiI ATGCAT 1 cut(s) 224
PaeR7I CTCGAG 1 cut(s) 239
PctI GAATGC 2 cut(s) 222, 224
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 164
PspN4I GGNNCC 2 cut(s) 130, 255
PspXI VCTCGAGB 1 cut(s) 239
PsuI RGATCY 1 cut(s) 72
RsaI GTAC 2 cut(s) 245, 375
RsaNI GTAC 2 cut(s) 244, 374
SacII CCGCGG 1 cut(s) 252
SaqAI TTAA 1 cut(s) 206
Sau3AI GATC 1 cut(s) 72
ScrFI CCNGG 1 cut(s) 258
SetI ASST 1 cut(s) 158
Sfr274I CTCGAG 1 cut(s) 239
Sfr303I CCGCGG 1 cut(s) 252
SgrBI CCGCGG 1 cut(s) 252
SlaI CTCGAG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 2 cut(s) 61, 390
SsiI CCGC 4 cut(s) 9, 249, 251, 354
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 256
TaqI TCGA 2 cut(s) 148, 240
TasI AATT 2 cut(s) 61, 390
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TseFI GTSAC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 336
XapI RAATTY 2 cut(s) 61, 390
XhoI CTCGAG 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.