Rmu_sc0022185.1_g000001

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022185.1
Physical Location & Seq
Forward (+)
1 .. 1324
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022185.1_g000001.1.cds

Sequence Viewer

Length: 1250 bp
tcgctcaaattccagtttcagaagccgactttcatttccttagatgttttcatagaagtcactcggttgaggaaacctatggcataacgccagaagaggtccagctcgcaagggaacttgatgattatttaaaaaagaaagacttcgcaactgaagagcaagcgaaagccgatgctaaagctaaggatattgaacaacagaaggaagtgcaaaaggcggctatggataagacgccaaatggaaaagtccctaccataagagtactaagaggacaggatccgccgttctcaaatcaagatctagggatgatgaaaaaatatcataggatgtattcagcattggccacttatggcctaactgaggaggaaagtgcgatgatgaaaatgttggaaaatgatctttcttcagagtcatacctcatcactgaggattctagcatcggcttaaaaatcagttatcaggcaatgatggagaattataaactagaagccaatactgataacttgcctatttctgatgctgacctgacttacctccgcacctaccataaacaacatccagctgctgagctttatggattcacgtccaccgagagcaaattactagataatttgtccaaatacctgcgggctcgtgcaatcgagtggcaagcagagacagagaaggcgtgcaccaagctgacaactggggctattgaagaattgaagaaagagcaagctagtctcaatcagcagctgaaggatgaggaaatggtagaaggtgctgccacgaacaatggtaagcaagacgattttgaagacgagggtgatgaagaagtcgattatggggaagaggaggaacaaggtgactatgataatgaagctggaatcgactacgacataggagatgatacagcttttgacatggaaaccttatccccattttacaagggcgaggccgcttttggaaaaggagaaggtaatacaatggacatcaacatggtttatgtcctaccttcaaaactcaaagctcaaccaggtcattcaaatgaactgatcggtgactttgttgccgatcaacaacctcgatttgagattgatgaagccgttgcccagttgaaggatgaagacggccgtgtggtactcacaaaaccaacggccaaaatggctcagcatttgaagccgttatacatcacggcttacatagagggatatccaataacgaaaatcaacaaccacgatttgagattgatgaagccgttgcccagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

415

Amino Acids

46.92

Weight (kDa)

4.61

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 479
Acc36I ACCTGC 1 cut(s) 632
AciI CCGC 5 cut(s) 217, 280, 537, 627, 938
AclWI GGATC 2 cut(s) 271, 284
AcoI YGGCCR 3 cut(s) 341, 1110, 1136
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 3 cut(s) 173, 389, 757
AcyI GRCGYC 1 cut(s) 232
AfaI GTAC 2 cut(s) 263, 1121
AfiI CCNNNNNNNGG 2 cut(s) 360, 1098
AgsI TTSAA 8 cut(s) 193, 697, 705, 796, 998, 1025, 1098, 1158
AjiI CACGTC 1 cut(s) 584
AjnI CCWGG 1 cut(s) 1014
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 2 cut(s) 649, 727
Alw44I GTGCAC 1 cut(s) 669
AlwI GGATC 2 cut(s) 271, 284
AlwNI CAGNNNCTG 2 cut(s) 565, 735
AoxI GGCC 5 cut(s) 341, 351, 935, 1110, 1136
ApaLI GTGCAC 1 cut(s) 669
ApeKI GCWGC 3 cut(s) 562, 732, 763
ApoI RAATTY 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 3 cut(s) 817, 856, 1051
AvaII GGWCC 1 cut(s) 99
BaeGI GKGCMC 1 cut(s) 673
BalI TGGCCA 1 cut(s) 343
BamHI GGATCC 1 cut(s) 276
BanII GRGCYC 1 cut(s) 633
BarI GAAGNNNNNNTAC 2 cut(s) 1150, 1182
BauI CACGAG 1 cut(s) 632
BbsI GAAGAC 2 cut(s) 803, 1112
Bbv12I GWGCWC 1 cut(s) 673
BbvI GCAGC 3 cut(s) 549, 744, 750
BccI CCATC 1 cut(s) 462
BceAI ACGGC 8 cut(s) 267, 1069, 1097, 1125, 1146, 1151, 1190, 1221
BciT130I CCWGG 1 cut(s) 1016
BcoDI GTCTC 2 cut(s) 649, 727
BfaI CTAG 5 cut(s) 301, 434, 484, 604, 719
BfuAI ACCTGC 1 cut(s) 632
BglI GCCNNNNNGGC 1 cut(s) 1144
BglII AGATCT 1 cut(s) 297
BisI GCNGC 5 cut(s) 218, 563, 733, 764, 938
BlpI GCTNAGC 2 cut(s) 566, 1148
BlsI GCNGC 5 cut(s) 219, 564, 734, 765, 939
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 1016
Bme18I GGWCC 1 cut(s) 99
BmgBI CACGTC 1 cut(s) 584
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 278
BmrFI CCNGG 1 cut(s) 1016
BmrI ACTGGG 3 cut(s) 695, 1086, 1238
BmsI GCATC 3 cut(s) 162, 446, 507
BmuI ACTGGG 3 cut(s) 695, 1086, 1238
BpiI GAAGAC 2 cut(s) 803, 1112
Bpu10I CCTNAGC 1 cut(s) 182
Bpu1102I GCTNAGC 2 cut(s) 566, 1148
BsaHI GRCGYC 1 cut(s) 232
Bsc4I CCNNNNNNNGG 2 cut(s) 360, 1098
Bse1I ACTGG 4 cut(s) 13, 690, 1092, 1244
Bse3DI GCAATG 1 cut(s) 470
BseBI CCWGG 1 cut(s) 1016
BseGI GGATG 5 cut(s) 311, 332, 555, 747, 1107
BseLI CCNNNNNNNGG 2 cut(s) 360, 1098
BseMI GCAATG 1 cut(s) 470
BseMII CTCAG 4 cut(s) 350, 416, 557, 1162
BseNI ACTGG 4 cut(s) 13, 690, 1092, 1244
BseRI GAGGAG 2 cut(s) 376, 847
BseSI GKGCMC 1 cut(s) 673
BseX3I CGGCCG 1 cut(s) 1110
BseXI GCAGC 3 cut(s) 549, 744, 750
Bsh1285I CGRYCG 1 cut(s) 1113
BshFI GGCC 5 cut(s) 343, 353, 937, 1112, 1138
BsiEI CGRYCG 1 cut(s) 1113
BsiHKAI GWGCWC 1 cut(s) 673
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 2 cut(s) 360, 1098
BsmAI GTCTC 2 cut(s) 649, 727
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 5 cut(s) 343, 353, 937, 1112, 1138
Bsp1286I GDGCHC 2 cut(s) 633, 673
Bsp143I GATC 5 cut(s) 276, 297, 396, 1034, 1053
Bsp1720I GCTNAGC 2 cut(s) 566, 1148
BspACI CCGC 5 cut(s) 217, 280, 537, 627, 938
BspANI GGCC 5 cut(s) 343, 353, 937, 1112, 1138
BspCNI CTCAG 4 cut(s) 351, 417, 558, 1161
BspLI GGNNCC 1 cut(s) 278
BspMI ACCTGC 1 cut(s) 632
BspPI GGATC 2 cut(s) 271, 284
BspQI GCTCTTC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 470
BsrI ACTGG 4 cut(s) 13, 690, 1092, 1244
BssMI GATC 5 cut(s) 276, 297, 396, 1034, 1053
BssNI GRCGYC 1 cut(s) 232
BssSI CACGAG 1 cut(s) 632
Bst2BI CACGAG 1 cut(s) 632
Bst2UI CCWGG 1 cut(s) 1016
Bst6I CTCTTC 3 cut(s) 89, 149, 824
BstACI GRCGYC 1 cut(s) 232
BstC8I GCNNGC 6 cut(s) 107, 161, 629, 650, 669, 716
BstDEI CTNAG 7 cut(s) 40, 182, 265, 359, 425, 566, 1148
BstENI CCTNNNNNAGG 1 cut(s) 358
BstF5I GGATG 5 cut(s) 311, 332, 555, 747, 1107
BstKTI GATC 5 cut(s) 279, 300, 399, 1037, 1056
BstMAI GTCTC 2 cut(s) 649, 727
BstMBI GATC 5 cut(s) 276, 297, 396, 1034, 1053
BstMCI CGRYCG 1 cut(s) 1113
BstMWI GCNNNNNNNGC 2 cut(s) 1144, 1158
BstNI CCWGG 1 cut(s) 1016
BstSCI CCNGG 1 cut(s) 1014
BstSLI GKGCMC 1 cut(s) 673
BstV1I GCAGC 3 cut(s) 549, 744, 750
BstV2I GAAGAC 2 cut(s) 803, 1112
BstX2I RGATCY 2 cut(s) 276, 297
BstYI RGATCY 2 cut(s) 276, 297
BstZI CGGCCG 1 cut(s) 1110
BsuRI GGCC 5 cut(s) 343, 353, 937, 1112, 1138
BtgZI GCGATG 1 cut(s) 388
BtrI CACGTC 1 cut(s) 584
BtsCI GGATG 5 cut(s) 311, 332, 555, 747, 1107
BtsIMutI CAGTG 1 cut(s) 422
BveI ACCTGC 1 cut(s) 632
Cac8I GCNNGC 6 cut(s) 107, 161, 629, 650, 669, 716
CaiI CAGNNNCTG 2 cut(s) 565, 735
Cfr13I GGNCC 1 cut(s) 99
CseI GACGC 1 cut(s) 240
CsiI ACCWGGT 1 cut(s) 1014
Csp6I GTAC 2 cut(s) 262, 1120
CviAII CATG 2 cut(s) 903, 978
CviQI GTAC 2 cut(s) 262, 1120
DdeI CTNAG 7 cut(s) 40, 182, 265, 359, 425, 566, 1148
DpnI GATC 5 cut(s) 278, 299, 398, 1036, 1055
DpnII GATC 5 cut(s) 276, 297, 396, 1034, 1053
DraI TTTAAA 1 cut(s) 131
EaeI YGGCCR 3 cut(s) 341, 1110, 1136
EagI CGGCCG 1 cut(s) 1110
Eam1104I CTCTTC 3 cut(s) 89, 149, 824
EarI CTCTTC 3 cut(s) 89, 149, 824
EciI GGCGGA 1 cut(s) 269
EclXI CGGCCG 1 cut(s) 1110
Eco24I GRGCYC 1 cut(s) 633
Eco32I GATATC 1 cut(s) 1192
Eco47I GGWCC 1 cut(s) 99
Eco52I CGGCCG 1 cut(s) 1110
Eco57I CTGAAG 3 cut(s) 173, 389, 757
EcoNI CCTNNNNNAGG 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 1014
EcoRV GATATC 1 cut(s) 1192
EcoT38I GRGCYC 1 cut(s) 633
FaeI CATG 2 cut(s) 906, 981
FalI AAGNNNNNCTT 2 cut(s) 127, 159
FaqI GGGAC 1 cut(s) 232
FatI CATG 2 cut(s) 902, 977
FauI CCCGC 1 cut(s) 620
Fnu4HI GCNGC 5 cut(s) 218, 563, 733, 764, 938
FokI GGATG 5 cut(s) 318, 339, 542, 754, 1114
FriOI GRGCYC 1 cut(s) 633
Fsp4HI GCNGC 5 cut(s) 218, 563, 733, 764, 938
FspBI CTAG 5 cut(s) 301, 434, 484, 604, 719
GluI GCNGC 5 cut(s) 218, 563, 733, 764, 938
HaeIII GGCC 5 cut(s) 343, 353, 937, 1112, 1138
HgaI GACGC 1 cut(s) 240
Hin1I GRCGYC 1 cut(s) 232
Hin1II CATG 2 cut(s) 906, 981
HinfI GANTC 4 cut(s) 409, 430, 578, 866
HphI GGTGA 3 cut(s) 817, 856, 1051
Hpy166II GTNNAC 2 cut(s) 587, 671
Hpy188I TCNGA 3 cut(s) 21, 408, 516
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 2 cut(s) 587, 671
HpyAV CCTTC 7 cut(s) 195, 657, 732, 751, 949, 1004, 1092
HpyCH4IV ACGT 1 cut(s) 583
HpyCH4V TGCA 3 cut(s) 210, 637, 671
HpyF10VI GCNNNNNNNGC 2 cut(s) 1144, 1158
HpyF3I CTNAG 7 cut(s) 40, 182, 265, 359, 425, 566, 1148
HpySE526I ACGT 1 cut(s) 583
Hsp92I GRCGYC 1 cut(s) 232
Hsp92II CATG 2 cut(s) 906, 981
Kzo9I GATC 5 cut(s) 276, 297, 396, 1034, 1053
LguI GCTCTTC 1 cut(s) 149
Lsp1109I GCAGC 3 cut(s) 549, 744, 750
LweI GCATC 3 cut(s) 162, 446, 507
MabI ACCWGGT 1 cut(s) 1014
MaeI CTAG 5 cut(s) 301, 434, 484, 604, 719
MaeII ACGT 1 cut(s) 583
MaeIII GTNAC 3 cut(s) 58, 844, 1039
MalI GATC 5 cut(s) 278, 299, 398, 1036, 1055
MboI GATC 5 cut(s) 276, 297, 396, 1034, 1053
MboII GAAGA 9 cut(s) 106, 166, 395, 709, 717, 808, 823, 841, 1117
MflI RGATCY 2 cut(s) 276, 297
MhlI GDGCHC 2 cut(s) 633, 673
MlsI TGGCCA 1 cut(s) 343
MluCI AATT 5 cut(s) 8, 474, 598, 609, 700
MluNI TGGCCA 1 cut(s) 343
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 1 cut(s) 368
Mox20I TGGCCA 1 cut(s) 343
MroXI GAANNNNTTC 1 cut(s) 142
MscI TGGCCA 1 cut(s) 343
MseI TTAA 2 cut(s) 130, 445
MslI CAYNNNNRTG 2 cut(s) 976, 1025
Msp20I TGGCCA 1 cut(s) 343
MspA1I CMGCKG 2 cut(s) 562, 735
MspR9I CCNGG 1 cut(s) 1016
MvaI CCWGG 1 cut(s) 1016
MwoI GCNNNNNNNGC 2 cut(s) 1144, 1158
NdeII GATC 5 cut(s) 276, 297, 396, 1034, 1053
NlaIII CATG 2 cut(s) 906, 981
NlaIV GGNNCC 1 cut(s) 278
NmuCI GTSAC 3 cut(s) 58, 844, 1039
PciSI GCTCTTC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 142
PfeI GAWTC 3 cut(s) 430, 578, 866
PkrI GCNGC 5 cut(s) 219, 564, 734, 765, 939
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
PsiI TTATAA 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 1014
PspGI CCWGG 1 cut(s) 1014
PspN4I GGNNCC 1 cut(s) 278
PspPI GGNCC 1 cut(s) 99
PstNI CAGNNNCTG 2 cut(s) 565, 735
PsuI RGATCY 2 cut(s) 276, 297
PvuII CAGCTG 2 cut(s) 562, 735
RsaI GTAC 2 cut(s) 263, 1121
RsaNI GTAC 2 cut(s) 262, 1120
RseI CAYNNNNRTG 2 cut(s) 976, 1025
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 2 cut(s) 130, 445
SatI GCNGC 5 cut(s) 218, 563, 733, 764, 938
Sau3AI GATC 5 cut(s) 276, 297, 396, 1034, 1053
Sau96I GGNCC 1 cut(s) 99
ScaI AGTACT 1 cut(s) 263
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 1 cut(s) 1016
SduI GDGCHC 2 cut(s) 633, 673
SexAI ACCWGGT 1 cut(s) 1014
SfaNI GCATC 3 cut(s) 162, 446, 507
SinI GGWCC 1 cut(s) 99
SmiMI CAYNNNNRTG 2 cut(s) 976, 1025
Sse9I AATT 5 cut(s) 8, 474, 598, 609, 700
SsiI CCGC 5 cut(s) 217, 280, 537, 627, 938
SspMI CTAG 5 cut(s) 301, 434, 484, 604, 719
StyD4I CCNGG 1 cut(s) 1014
TaiI ACGT 1 cut(s) 586
TaqI TCGA 4 cut(s) 641, 818, 869, 1065
TasI AATT 5 cut(s) 8, 474, 598, 609, 700
TatI WGTACW 1 cut(s) 261
TauI GCSGC 2 cut(s) 220, 940
TfiI GAWTC 3 cut(s) 430, 578, 866
Tru1I TTAA 2 cut(s) 130, 445
Tru9I TTAA 2 cut(s) 130, 445
TscAI CASTG 1 cut(s) 429
TseFI GTSAC 3 cut(s) 58, 844, 1039
TseI GCWGC 3 cut(s) 562, 732, 763
Tsp45I GTSAC 3 cut(s) 58, 844, 1039
TspRI CASTG 1 cut(s) 429
VneI GTGCAC 1 cut(s) 669
VpaK11BI GGWCC 1 cut(s) 99
XagI CCTNNNNNAGG 1 cut(s) 358
XapI RAATTY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 142
XspI CTAG 5 cut(s) 301, 434, 484, 604, 719
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.