Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000560

Physical Location & Seq

Genomic Coordinates Reverse (-)

56644600 .. 56654882

Gene Structure 10283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG405800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGATCCAAGTCAAAGATCCCATCCTCATTGATGCTTGTATAGGTGGATACCAATTTTCGAGGGTTTTAGTGGATGGCGGATCAGCTGTCAACATCCTTCCTTGCTCCGTTTTACGTCAACTCCACCCTGCCAGGTATGGCTTTGTTCCAACTGATATTTCTGTTTACGACTATACAGGGGAAGAGGCTGAAGTCAGAGGGGCGTTGCCATTGATGGTCGAGGTCATACGGTCGGCTCTAACTGAAGATAAAGAGGATACCGCCATTGATATGGTATATGTGCTTCCACTTGAGTTTCAGGCTCAGGCAGGACAGTCGGACGGGATGGAGGGAGATGTCCGAGAAGAAAGTGAATGCCCAGCTCCAGTCCAAGACTTGGCCATAGCTCACTTTCCAAAGCCAACACCAGCTATGTCCAAGCATATCAAGCCGTTGACATTGAGACCATATCCTATATCTAGTAAGTGTGTGGTACCTTCTCATATTGATCTACCTGATTACCCAGCTGATGGAATCCCAAAAGAGGAACCCAGTAGTGACCTGCAGCGTGTTGTTGAGATCAAAACTCCGGATCAAATTGAGAGGATGCGAGAAACTTGTCGATGCCTTTTCACTTTATCCTGTGGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

210

Amino Acids

23.13

Weight (kDa)

4.67

Isoelectric Point (pI)

59.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis	pycom11g14070
rosa_chinensis	RchiOBHm_Chr6g0263201
rosa_laevigata	RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora	Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha	Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	549
Acc65I	GGTACC	1 cut(s)	472
AccB1I	GGYRCC	1 cut(s)	472
AccB7I	CCANNNNNTGG	2 cut(s)	376, 509
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	2 cut(s)	78, 261
AclWI	GGATC	3 cut(s)	11, 88, 579
AcoI	YGGCCR	1 cut(s)	378
AcuI	CTGAAG	2 cut(s)	210, 264
AfaI	GTAC	1 cut(s)	474
AfiI	CCNNNNNNNGG	3 cut(s)	376, 509, 523
AjnI	CCWGG	1 cut(s)	131
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	5 cut(s)	86, 362, 386, 410, 506
AluI	AGCT	5 cut(s)	86, 362, 386, 410, 506
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	3 cut(s)	11, 88, 579
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	544
Asp718I	GGTACC	1 cut(s)	472
AspS9I	GGNCC	1 cut(s)	626
AvaII	GGWCC	1 cut(s)	626
BalI	TGGCCA	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	472
BarI	GAAGNNNNNNTAC	2 cut(s)	267, 299
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	5 cut(s)	29, 68, 208, 319, 503
BceAI	ACGGC	1 cut(s)	415
BcgI	CGANNNNNNTGC	2 cut(s)	297, 331
BciT130I	CCWGG	1 cut(s)	133
BciVI	GTATCC	2 cut(s)	41, 250
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	542
BfuAI	ACCTGC	1 cut(s)	549
BfuI	GTATCC	2 cut(s)	41, 250
BisI	GCNGC	1 cut(s)	545
BlsI	GCNGC	1 cut(s)	546
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	626
BmgT120I	GGNCC	1 cut(s)	626
BmiI	GGNNCC	2 cut(s)	474, 528
BmrFI	CCNGG	1 cut(s)	133
BmrI	ACTGGG	1 cut(s)	525
BmsI	GCATC	3 cut(s)	22, 576, 593
BmuI	ACTGGG	1 cut(s)	525
BpmI	CTGGAG	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	436
BsaWI	WCCGGW	1 cut(s)	568
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	3 cut(s)	376, 509, 523
Bse1I	ACTGG	2 cut(s)	365, 531
BseAI	TCCGGA	1 cut(s)	568
BseBI	CCWGG	1 cut(s)	133
BseGI	GGATG	5 cut(s)	21, 79, 93, 330, 591
BseLI	CCNNNNNNNGG	3 cut(s)	376, 509, 523
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	2 cut(s)	365, 531
BseXI	GCAGC	1 cut(s)	556
BseYI	CCCAGC	2 cut(s)	358, 502
Bsh1285I	CGRYCG	1 cut(s)	233
BshFI	GGCC	1 cut(s)	380
BshNI	GGYRCC	1 cut(s)	472
BsiEI	CGRYCG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	569
BslI	CCNNNNNNNGG	3 cut(s)	376, 509, 523
BsmAI	GTCTC	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	380
Bso31I	GGTCTC	1 cut(s)	436
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	6 cut(s)	3, 16, 80, 487, 558, 571
BspACI	CCGC	2 cut(s)	78, 261
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	1 cut(s)	316
BspEI	TCCGGA	1 cut(s)	568
BspLI	GGNNCC	2 cut(s)	474, 528
BspMAI	CTGCAG	1 cut(s)	546
BspMI	ACCTGC	1 cut(s)	549
BspPI	GGATC	3 cut(s)	11, 88, 579
BspT107I	GGYRCC	1 cut(s)	472
BspTNI	GGTCTC	1 cut(s)	436
BsrI	ACTGG	2 cut(s)	365, 531
BssMI	GATC	6 cut(s)	3, 16, 80, 487, 558, 571
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	2 cut(s)	231, 315
Bst6I	CTCTTC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	5 cut(s)	21, 79, 93, 330, 591
BstKTI	GATC	6 cut(s)	6, 19, 83, 490, 561, 574
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	6 cut(s)	3, 16, 80, 487, 558, 571
BstMCI	CGRYCG	1 cut(s)	233
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BstSFI	CTRYAG	1 cut(s)	542
BstV1I	GCAGC	1 cut(s)	556
BstX2I	RGATCY	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	16
BsuI	GTATCC	2 cut(s)	41, 250
BsuRI	GGCC	1 cut(s)	380
BtsCI	GGATG	5 cut(s)	21, 79, 93, 330, 591
BveI	ACCTGC	1 cut(s)	549
Cfr13I	GGNCC	1 cut(s)	626
Csp6I	GTAC	1 cut(s)	473
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	6 cut(s)	5, 18, 82, 489, 560, 573
DpnII	GATC	6 cut(s)	3, 16, 80, 487, 558, 571
EaeI	YGGCCR	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EciI	GGCGGA	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	626
Eco57I	CTGAAG	2 cut(s)	210, 264
EcoRII	CCWGG	1 cut(s)	131
Fnu4HI	GCNGC	1 cut(s)	545
FokI	GGATG	5 cut(s)	8, 80, 86, 337, 598
Fsp4HI	GCNGC	1 cut(s)	545
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	1 cut(s)	545
GsaI	CCCAGC	2 cut(s)	362, 506
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	1 cut(s)	569
HincII	GTYRAC	3 cut(s)	91, 119, 435
HindII	GTYRAC	3 cut(s)	91, 119, 435
HinfI	GANTC	1 cut(s)	513
HpaII	CCGG	1 cut(s)	569
Hpy166II	GTNNAC	5 cut(s)	91, 119, 166, 435, 626
Hpy188I	TCNGA	3 cut(s)	197, 319, 341
Hpy188III	TCNNGA	1 cut(s)	569
Hpy8I	GTNNAC	5 cut(s)	91, 119, 166, 435, 626
HpyAV	CCTTC	2 cut(s)	107, 486
HpyCH4III	ACNGT	2 cut(s)	231, 315
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	115
Kpn2I	TCCGGA	1 cut(s)	568
KpnI	GGTACC	1 cut(s)	476
Kzo9I	GATC	6 cut(s)	3, 16, 80, 487, 558, 571
LmnI	GCTCC	2 cut(s)	110, 367
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	3 cut(s)	22, 576, 593
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	6 cut(s)	5, 18, 82, 489, 560, 573
MboI	GATC	6 cut(s)	3, 16, 80, 487, 558, 571
MboII	GAAGA	3 cut(s)	194, 257, 356
MflI	RGATCY	1 cut(s)	16
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	2 cut(s)	53, 576
MluNI	TGGCCA	1 cut(s)	380
MmeI	TCCRAC	2 cut(s)	173, 297
MnlI	CCTC	9 cut(s)	35, 54, 178, 191, 214, 247, 322, 517, 576
Mox20I	TGGCCA	1 cut(s)	380
MroI	TCCGGA	1 cut(s)	568
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	1 cut(s)	631
MslI	CAYNNNNRTG	1 cut(s)	269
Msp20I	TGGCCA	1 cut(s)	380
MspA1I	CMGCKG	2 cut(s)	86, 506
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	1 cut(s)	133
Mva1269I	GAATGC	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	427
NdeII	GATC	6 cut(s)	3, 16, 80, 487, 558, 571
NlaIV	GGNNCC	2 cut(s)	474, 528
NmuCI	GTSAC	1 cut(s)	536
PctI	GAATGC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	513
PflMI	CCANNNNNTGG	2 cut(s)	376, 509
PkrI	GCNGC	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	131
PspFI	CCCAGC	2 cut(s)	358, 502
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	474, 528
PspPI	GGNCC	1 cut(s)	626
PstI	CTGCAG	1 cut(s)	546
PsuI	RGATCY	1 cut(s)	16
PvuII	CAGCTG	2 cut(s)	86, 506
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	631
SatI	GCNGC	1 cut(s)	545
Sau3AI	GATC	6 cut(s)	3, 16, 80, 487, 558, 571
Sau96I	GGNCC	1 cut(s)	626
ScrFI	CCNGG	1 cut(s)	133
SfaNI	GCATC	3 cut(s)	22, 576, 593
SfcI	CTRYAG	1 cut(s)	542
SinI	GGWCC	1 cut(s)	626
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	53, 576
SsiI	CCGC	2 cut(s)	78, 261
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	131
TaaI	ACNGT	2 cut(s)	231, 315
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	3 cut(s)	59, 219, 601
TasI	AATT	2 cut(s)	53, 576
TfiI	GAWTC	1 cut(s)	513
Tru1I	TTAA	1 cut(s)	631
Tru9I	TTAA	1 cut(s)	631
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	1 cut(s)	544
Tsp45I	GTSAC	1 cut(s)	536
TspGWI	ACGGA	1 cut(s)	97
Van91I	CCANNNNNTGG	2 cut(s)	376, 509
VpaK11BI	GGWCC	1 cut(s)	626
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.