RLG00000001861

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000560
Physical Location & Seq
Reverse (-)
22175518 .. 22176399
882 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001861

Sequence Viewer

Length: 546 bp
ATGTTCCAGGCAGCATGGGAAAGTTCATCTCCAACAGTGCCCACACCGGAGGATAGATCAGCCTTACCAGTGTCTAAGGAAGATTTATTGTATTTAACAGAGTATCACTGGCGCTATTCAGTTGAGGAGTTATACGGCCTTACTGAGGAAGAGGAAGAATTGGCAGATGCGTTTGATCGGTACATCTCCCAAAAGAAGAGTGAGGTAGGGATAAAAGTTAAAGATAATTCCCGATCTAAGCAGGAGAGAGAGCTATTAACAAGGATGGGTGAACGTATTCAGCAGCAGGAGATTGAGTATGCAGTTGAAGTAAGCAAGGAAGACTCTGACTTTGAGCTGAGTGATGGGCAAGAAGATATGGTCACAGACTTCAATGAGATTCAGCAAGAAATCACCTTTCATGCTGCCGAGGTTGAAAATTCACAACCTCAAGTTCATGGTGAAAAATTTGAAATTGAAGATGAAAAATTTGAGATCGAAGATGAAAAATTTGAGATCGAAGATGAACAAGCAATGATTGATGTTGAAGATCAAGAGGGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

21.28

Weight (kDa)

4.13

Isoelectric Point (pI)

73.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 418, 446, 467, 488
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 6 cut(s) 308, 373, 416, 452, 458, 527
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 2 cut(s) 253, 337
AluI AGCT 2 cut(s) 253, 337
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 3 cut(s) 11, 283, 404
ApoI RAATTY 4 cut(s) 418, 446, 467, 488
ArsI GACNNNNNNTTYG 2 cut(s) 314, 346
Asp700I GAANNNNTTC 1 cut(s) 276
AspLEI GCGC 1 cut(s) 114
AsuHPI GGTGA 3 cut(s) 281, 385, 452
BaeGI GKGCMC 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 327
BbvI GCAGC 3 cut(s) 23, 295, 391
BccI CCATC 2 cut(s) 259, 338
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 8
BfaI CTAG 1 cut(s) 544
BfoI RGCGCY 1 cut(s) 115
BisI GCNGC 3 cut(s) 12, 284, 405
BlsI GCNGC 3 cut(s) 13, 285, 406
Bme1390I CCNGG 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 8
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 408
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse1I ACTGG 2 cut(s) 68, 113
Bse3DI GCAATG 1 cut(s) 519
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 408
BseGI GGATG 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 2 cut(s) 135, 329
BseNI ACTGG 2 cut(s) 68, 113
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 3 cut(s) 23, 295, 391
BshFI GGCC 1 cut(s) 138
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 145
BsnI GGCC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 6 cut(s) 56, 175, 233, 474, 495, 529
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 136, 330
BsrDI GCAATG 1 cut(s) 519
BsrI ACTGG 2 cut(s) 68, 113
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 6 cut(s) 56, 175, 233, 474, 495, 529
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 2 cut(s) 144, 191
BstDEI CTNAG 4 cut(s) 75, 144, 237, 338
BstENI CCTNNNNNAGG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 270
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 6 cut(s) 59, 178, 236, 477, 498, 532
BstMBI GATC 6 cut(s) 56, 175, 233, 474, 495, 529
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 23, 295, 391
BstV2I GAAGAC 1 cut(s) 327
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 270
BtsIMutI CAGTG 3 cut(s) 42, 75, 106
CfoI GCGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 181
CviAII CATG 3 cut(s) 15, 401, 437
CviJI RGCY 4 cut(s) 62, 138, 253, 337
CviKI_1 RGCY 4 cut(s) 62, 138, 253, 337
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 4 cut(s) 75, 144, 237, 338
DpnI GATC 6 cut(s) 58, 177, 235, 476, 497, 531
DpnII GATC 6 cut(s) 56, 175, 233, 474, 495, 529
Eam1104I CTCTTC 2 cut(s) 144, 191
EarI CTCTTC 2 cut(s) 144, 191
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 6
FaeI CATG 3 cut(s) 18, 404, 440
FaiI YATR 6 cut(s) 16, 133, 300, 359, 402, 438
FatI CATG 3 cut(s) 14, 400, 436
Fnu4HI GCNGC 3 cut(s) 12, 284, 405
FokI GGATG 1 cut(s) 277
Fsp4HI GCNGC 3 cut(s) 12, 284, 405
FspBI CTAG 1 cut(s) 544
GlaI GCGC 1 cut(s) 113
GluI GCNGC 3 cut(s) 12, 284, 405
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 47
HhaI GCGC 1 cut(s) 114
Hin1II CATG 3 cut(s) 18, 404, 440
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 2 cut(s) 323, 379
HpaII CCGG 1 cut(s) 47
HphI GGTGA 3 cut(s) 281, 385, 452
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 2 cut(s) 231, 533
Hpy8I GTNNAC 1 cut(s) 272
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 1 cut(s) 302
HpyF3I CTNAG 4 cut(s) 75, 144, 237, 338
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 3 cut(s) 18, 404, 440
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 6 cut(s) 56, 175, 233, 474, 495, 529
LpnPI CCDG 6 cut(s) 20, 60, 81, 94, 227, 272
Lsp1109I GCAGC 3 cut(s) 23, 295, 391
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 544
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 2 cut(s) 361, 539
MalI GATC 6 cut(s) 58, 177, 235, 476, 497, 531
MboI GATC 6 cut(s) 56, 175, 233, 474, 495, 529
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 7 cut(s) 158, 226, 418, 446, 453, 467, 488
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 8 cut(s) 43, 118, 139, 145, 196, 403, 438, 529
MroXI GAANNNNTTC 1 cut(s) 276
MseI TTAA 3 cut(s) 95, 219, 257
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 8
NdeII GATC 6 cut(s) 56, 175, 233, 474, 495, 529
NlaIII CATG 3 cut(s) 18, 404, 440
NmeAIII GCCGAG 1 cut(s) 433
NmuCI GTSAC 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 1 cut(s) 379
PkrI GCNGC 3 cut(s) 13, 285, 406
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 3 cut(s) 95, 219, 257
SatI GCNGC 3 cut(s) 12, 284, 405
Sau3AI GATC 6 cut(s) 56, 175, 233, 474, 495, 529
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 1 cut(s) 42
SetI ASST 7 cut(s) 207, 255, 277, 339, 398, 414, 430
SfaNI GCATC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
Sse9I AATT 7 cut(s) 158, 226, 418, 446, 453, 467, 488
SspMI CTAG 1 cut(s) 544
StyD4I CCNGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 277
TaqI TCGA 2 cut(s) 477, 498
TasI AATT 7 cut(s) 158, 226, 418, 446, 453, 467, 488
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 3 cut(s) 95, 219, 257
Tru9I TTAA 3 cut(s) 95, 219, 257
TscAI CASTG 3 cut(s) 42, 75, 113
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 3 cut(s) 11, 283, 404
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 6 cut(s) 15, 389, 425, 477, 498, 519
TspRI CASTG 3 cut(s) 42, 75, 113
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 4 cut(s) 418, 446, 467, 488
XmnI GAANNNNTTC 1 cut(s) 276
XspI CTAG 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.