Rmu_ssc0000242.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000242.1
OG0000560
Physical Location & Seq
Forward (+)
8638 .. 9201
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000242.1_g000003.1.cds

Sequence Viewer

Length: 564 bp
atgaataagacgccaaatggaaaagtccctaccataagagtactgagaggacaggatccgccgttctcaaatcaagatctggggatgatgaaaaaatatcataggatgtattcagcattggccacttatggcctaactgaggaggaaagcgcgatgatgaaaatgttggaaaatgatctgtcttcagagtcacacctcatcattgaggattctagcatcggcttaaaaatcagttatcaggcaatgatgaagaattgtaagctggaagccaatactaataacttacctatttctgatgctgacctgaattacctccgcacctaccataaacaacatccagctgctgagatttatggattcacgtccgccgagggaaaattactagataatttatccaaatacctgcgggctcatgcaatcgagtggcaagcagagacagaaaaggcgtcctccaagctgacaactagggccattaaagaattgaagaaagagcaagccagtctcaatcagcagctgaaggatgaggaaatggtagaaggtgctgccacgaacaatggtaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.07

Weight (kDa)

6.53

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 411
AccII CGCG 1 cut(s) 152
AciI CCGC 4 cut(s) 59, 316, 366, 406
AclWI GGATC 2 cut(s) 50, 63
AcoI YGGCCR 1 cut(s) 120
AcuI CTGAAG 2 cut(s) 168, 536
AcyI GRCGYC 2 cut(s) 11, 446
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 1 cut(s) 484
AjiI CACGTC 1 cut(s) 363
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 4 cut(s) 262, 341, 457, 514
AluI AGCT 4 cut(s) 262, 341, 457, 514
Alw26I GTCTC 2 cut(s) 428, 506
AlwI GGATC 2 cut(s) 50, 63
AlwNI CAGNNNCTG 2 cut(s) 344, 514
AoxI GGCC 3 cut(s) 120, 130, 468
ApeKI GCWGC 3 cut(s) 341, 511, 542
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 468
BalI TGGCCA 1 cut(s) 122
BamHI GGATCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 328, 523, 529
BceAI ACGGC 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 428, 506
BfaI CTAG 3 cut(s) 213, 383, 465
BfuAI ACCTGC 1 cut(s) 411
BglII AGATCT 1 cut(s) 76
BisI GCNGC 3 cut(s) 342, 512, 543
BlsI GCNGC 3 cut(s) 343, 513, 544
BmcAI AGTACT 1 cut(s) 42
BmgBI CACGTC 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 468
BmiI GGNNCC 1 cut(s) 57
BmsI GCATC 2 cut(s) 225, 286
BpiI GAAGAC 1 cut(s) 174
BsaHI GRCGYC 2 cut(s) 11, 446
BsaJI CCNNGG 1 cut(s) 369
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 498
Bse3DI GCAATG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 4 cut(s) 90, 111, 334, 526
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 3 cut(s) 35, 129, 336
BseNI ACTGG 1 cut(s) 498
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 3 cut(s) 328, 523, 529
Bsh1236I CGCG 1 cut(s) 152
BshFI GGCC 3 cut(s) 122, 132, 470
BslFI GGGAC 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 428, 506
BsmFI GGGAC 1 cut(s) 11
BsnI GGCC 3 cut(s) 122, 132, 470
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 3 cut(s) 55, 76, 175
BspACI CCGC 4 cut(s) 59, 316, 366, 406
BspANI GGCC 3 cut(s) 122, 132, 470
BspCNI CTCAG 3 cut(s) 36, 130, 337
BspFNI CGCG 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 411
BspPI GGATC 2 cut(s) 50, 63
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 1 cut(s) 498
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 3 cut(s) 55, 76, 175
BssNI GRCGYC 2 cut(s) 11, 446
BstACI GRCGYC 2 cut(s) 11, 446
BstC8I GCNNGC 3 cut(s) 408, 429, 495
BstDEI CTNAG 3 cut(s) 44, 138, 345
BstENI CCTNNNNNAGG 1 cut(s) 137
BstF5I GGATG 4 cut(s) 90, 111, 334, 526
BstFNI CGCG 1 cut(s) 152
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 3 cut(s) 58, 79, 178
BstMAI GTCTC 2 cut(s) 428, 506
BstMBI GATC 3 cut(s) 55, 76, 175
BstUI CGCG 1 cut(s) 152
BstV1I GCAGC 3 cut(s) 328, 523, 529
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 2 cut(s) 55, 76
BstYI RGATCY 2 cut(s) 55, 76
BsuRI GGCC 3 cut(s) 122, 132, 470
BtgZI GCGATG 1 cut(s) 167
BtrI CACGTC 1 cut(s) 363
BtsCI GGATG 4 cut(s) 90, 111, 334, 526
BveI ACCTGC 1 cut(s) 411
Cac8I GCNNGC 3 cut(s) 408, 429, 495
CaiI CAGNNNCTG 2 cut(s) 344, 514
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 468
CseI GACGC 2 cut(s) 19, 435
Csp6I GTAC 1 cut(s) 41
CviAII CATG 1 cut(s) 413
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 3 cut(s) 44, 138, 345
DpnI GATC 3 cut(s) 57, 78, 177
DpnII GATC 3 cut(s) 55, 76, 175
EaeI YGGCCR 1 cut(s) 120
EciI GGCGGA 2 cut(s) 48, 355
Eco24I GRGCYC 1 cut(s) 412
Eco57I CTGAAG 2 cut(s) 168, 536
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 412
FaeI CATG 1 cut(s) 416
FaiI YATR 6 cut(s) 35, 102, 129, 327, 354, 414
FaqI GGGAC 1 cut(s) 11
FatI CATG 1 cut(s) 412
FauI CCCGC 1 cut(s) 399
Fnu4HI GCNGC 3 cut(s) 342, 512, 543
FokI GGATG 4 cut(s) 97, 118, 321, 533
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 3 cut(s) 342, 512, 543
FspBI CTAG 3 cut(s) 213, 383, 465
GlaI GCGC 1 cut(s) 151
GluI GCNGC 3 cut(s) 342, 512, 543
HaeIII GGCC 3 cut(s) 122, 132, 470
HgaI GACGC 2 cut(s) 19, 435
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 2 cut(s) 11, 446
Hin1II CATG 1 cut(s) 416
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 3 cut(s) 188, 209, 357
Hpy188I TCNGA 2 cut(s) 187, 295
Hpy188III TCNNGA 1 cut(s) 74
HpyAV CCTTC 2 cut(s) 511, 530
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 1 cut(s) 416
HpyF3I CTNAG 3 cut(s) 44, 138, 345
HpySE526I ACGT 1 cut(s) 362
Hsp92I GRCGYC 2 cut(s) 11, 446
Hsp92II CATG 1 cut(s) 416
HspAI GCGC 1 cut(s) 150
Kzo9I GATC 3 cut(s) 55, 76, 175
LpnPI CCDG 8 cut(s) 38, 65, 224, 248, 317, 351, 416, 511
Lsp1109I GCAGC 3 cut(s) 328, 523, 529
LweI GCATC 2 cut(s) 225, 286
MaeI CTAG 3 cut(s) 213, 383, 465
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 1 cut(s) 189
MalI GATC 3 cut(s) 57, 78, 177
MboI GATC 3 cut(s) 55, 76, 175
MboII GAAGA 3 cut(s) 174, 262, 496
MflI RGATCY 2 cut(s) 55, 76
MhlI GDGCHC 1 cut(s) 412
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 5 cut(s) 253, 307, 377, 388, 479
MluNI TGGCCA 1 cut(s) 122
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 9 cut(s) 41, 133, 136, 199, 206, 323, 364, 460, 517
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
MseI TTAA 2 cut(s) 224, 474
Msp20I TGGCCA 1 cut(s) 122
MspA1I CMGCKG 2 cut(s) 341, 514
MvnI CGCG 1 cut(s) 152
NdeII GATC 3 cut(s) 55, 76, 175
NlaIII CATG 1 cut(s) 416
NlaIV GGNNCC 1 cut(s) 57
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 189
PfeI GAWTC 2 cut(s) 209, 357
PkrI GCNGC 3 cut(s) 343, 513, 544
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 468
PstNI CAGNNNCTG 2 cut(s) 344, 514
PsuI RGATCY 2 cut(s) 55, 76
PvuII CAGCTG 2 cut(s) 341, 514
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 224, 474
SatI GCNGC 3 cut(s) 342, 512, 543
Sau3AI GATC 3 cut(s) 55, 76, 175
Sau96I GGNCC 1 cut(s) 468
ScaI AGTACT 1 cut(s) 42
SchI GAGTC 1 cut(s) 197
SduI GDGCHC 1 cut(s) 412
SfaNI GCATC 2 cut(s) 225, 286
Sse9I AATT 5 cut(s) 253, 307, 377, 388, 479
SsiI CCGC 4 cut(s) 59, 316, 366, 406
SspMI CTAG 3 cut(s) 213, 383, 465
TaiI ACGT 1 cut(s) 365
TaqI TCGA 1 cut(s) 420
TasI AATT 5 cut(s) 253, 307, 377, 388, 479
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 2 cut(s) 209, 357
Tru1I TTAA 2 cut(s) 224, 474
Tru9I TTAA 2 cut(s) 224, 474
TseFI GTSAC 1 cut(s) 189
TseI GCWGC 3 cut(s) 341, 511, 542
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 4 cut(s) 17, 104, 173, 263
XagI CCTNNNNNAGG 1 cut(s) 137
XspI CTAG 3 cut(s) 213, 383, 465
ZrmI AGTACT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.