RLG00000002050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000560
Physical Location & Seq
Forward (+)
24745228 .. 24745901
674 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002050

Sequence Viewer

Length: 588 bp
ATGGTGCAAAGTACATCAAGTGCAGGATTGAAGATATTGTGTCAAGCACAATTAGATGGTGTGGAGTTGGTGGCAGACACTGTTGATTTACCAGTATCCCGGCGAGATCTCAAGTACCTCAAGGAGTACCACAAAATGTATTCGGTTATCAGTACATATGGAGGCGATTCTGATTTTGAGTTGGAAGTGAAACTAGCAAACATGGACATAGACTGCAATGAAACTCATCAACAAACCAGTTCTCTTGTGTGCGTTGGAAAAGCTAATCAAGTACCGGCAGATGGAAAATTCCATATTGAAGATGAGCAGCTAATGATTGAGGTAGAAGAAGAACCAGAGTTTGAGAAGCAAATTGGTGTTAGCTATGAAGAAGACTTCATTATCCGTGATGAAGACCTCATTGGCCGCGGCGAAAGCTTCAATGGCCGCTACCATGGTGAAGACCTCACTGGCCGCAGTAAAGGAGGTGAGATGGATGAAGGAGTTGCAGCGTCATCATCACAGAATCAGGTAATGACATTGTCCACCAATGGAGGAGAGGCCGCAGTGAGCATGGTTTATGTTCTTCCTATGGACTTTTTAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.5

Weight (kDa)

4.31

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 408
AciI CCGC 5 cut(s) 406, 408, 427, 454, 543
AcoI YGGCCR 3 cut(s) 403, 424, 451
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 5 cut(s) 13, 116, 128, 154, 273
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 3 cut(s) 31, 299, 421
AjuI GAANNNNNNNTTGG 2 cut(s) 384, 416
AluBI AGCT 4 cut(s) 263, 310, 363, 417
AluI AGCT 4 cut(s) 263, 310, 363, 417
AlwNI CAGNNNCTG 1 cut(s) 80
AoxI GGCC 4 cut(s) 403, 424, 451, 540
ApeKI GCWGC 2 cut(s) 307, 488
ApoI RAATTY 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 449, 479
BbsI GAAGAC 3 cut(s) 378, 399, 447
BbvI GCAGC 2 cut(s) 319, 500
BccI CCATC 3 cut(s) 50, 275, 466
BciVI GTATCC 1 cut(s) 106
BcnI CCSGG 1 cut(s) 100
BfaI CTAG 1 cut(s) 194
BfuI GTATCC 1 cut(s) 106
BglII AGATCT 1 cut(s) 106
BisI GCNGC 7 cut(s) 308, 406, 409, 427, 454, 489, 543
BlsI GCNGC 7 cut(s) 309, 407, 410, 428, 455, 490, 544
Bme1390I CCNGG 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 100
BpiI GAAGAC 3 cut(s) 378, 399, 447
BpuEI CTTGAG 2 cut(s) 95, 104
BpuMI CCSGG 1 cut(s) 100
BsaJI CCNNGG 2 cut(s) 406, 433
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 3 cut(s) 92, 237, 454
Bse3DI GCAATG 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 406, 433
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMI GCAATG 1 cut(s) 223
BseNI ACTGG 3 cut(s) 92, 237, 454
BseRI GAGGAG 1 cut(s) 549
BseXI GCAGC 2 cut(s) 319, 500
BsgI GTGCAG 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 408
BshFI GGCC 4 cut(s) 405, 426, 453, 542
BsiSI CCGG 2 cut(s) 100, 275
BslI CCNNNNNNNGG 1 cut(s) 281
BsnI GGCC 4 cut(s) 405, 426, 453, 542
Bsp143I GATC 1 cut(s) 106
Bsp19I CCATGG 1 cut(s) 433
BspACI CCGC 5 cut(s) 406, 408, 427, 454, 543
BspANI GGCC 4 cut(s) 405, 426, 453, 542
BspFNI CGCG 1 cut(s) 408
BsrDI GCAATG 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 274
BsrI ACTGG 3 cut(s) 92, 237, 454
BssAI RCCGGY 1 cut(s) 274
BssECI CCNNGG 2 cut(s) 406, 433
BssMI GATC 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 433
Bst4CI ACNGT 1 cut(s) 82
BstDSI CCRYGG 2 cut(s) 406, 433
BstF5I GGATG 1 cut(s) 481
BstFNI CGCG 1 cut(s) 408
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 414, 423
BstSCI CCNGG 1 cut(s) 98
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 2 cut(s) 319, 500
BstV2I GAAGAC 3 cut(s) 378, 399, 447
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuI GTATCC 1 cut(s) 106
BsuRI GGCC 4 cut(s) 405, 426, 453, 542
BtgI CCRYGG 2 cut(s) 406, 433
BtsCI GGATG 1 cut(s) 481
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 3 cut(s) 78, 447, 552
CaiI CAGNNNCTG 1 cut(s) 80
Cfr10I RCCGGY 1 cut(s) 274
Cfr42I CCGCGG 1 cut(s) 409
CseI GACGC 1 cut(s) 480
Csp6I GTAC 5 cut(s) 12, 115, 127, 153, 272
CviAII CATG 3 cut(s) 202, 434, 553
CviJI RGCY 8 cut(s) 263, 310, 363, 405, 417, 426, 453, 542
CviKI_1 RGCY 8 cut(s) 263, 310, 363, 405, 417, 426, 453, 542
CviQI GTAC 5 cut(s) 12, 115, 127, 153, 272
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
EaeI YGGCCR 3 cut(s) 403, 424, 451
Eco130I CCWWGG 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 433
FaeI CATG 3 cut(s) 205, 437, 556
FatI CATG 3 cut(s) 201, 433, 552
FauNDI CATATG 1 cut(s) 157
Fnu4HI GCNGC 7 cut(s) 308, 406, 409, 427, 454, 489, 543
FokI GGATG 1 cut(s) 488
Fsp4HI GCNGC 7 cut(s) 308, 406, 409, 427, 454, 489, 543
FspBI CTAG 1 cut(s) 194
GluI GCNGC 7 cut(s) 308, 406, 409, 427, 454, 489, 543
HaeIII GGCC 4 cut(s) 405, 426, 453, 542
HapII CCGG 2 cut(s) 100, 275
HgaI GACGC 1 cut(s) 480
Hin1II CATG 3 cut(s) 205, 437, 556
HindIII AAGCTT 1 cut(s) 415
HinfI GANTC 2 cut(s) 167, 505
HpaII CCGG 2 cut(s) 100, 275
HphI GGTGA 2 cut(s) 449, 479
Hpy166II GTNNAC 1 cut(s) 525
Hpy188I TCNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 525
HpyAV CCTTC 1 cut(s) 473
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 4 cut(s) 7, 23, 216, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 414, 423
Hsp92II CATG 3 cut(s) 205, 437, 556
KspI CCGCGG 1 cut(s) 409
Kzo9I GATC 1 cut(s) 106
LpnPI CCDG 8 cut(s) 9, 105, 113, 250, 288, 348, 435, 494
Lsp1109I GCAGC 2 cut(s) 319, 500
MaeI CTAG 1 cut(s) 194
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 9 cut(s) 43, 311, 338, 341, 380, 383, 404, 452, 557
MflI RGATCY 1 cut(s) 106
MluCI AATT 3 cut(s) 50, 287, 351
MmeI TCCRAC 2 cut(s) 162, 235
MnlI CCTC 8 cut(s) 128, 155, 313, 407, 455, 458, 527, 532
MspA1I CMGCKG 1 cut(s) 408
MspI CCGG 2 cut(s) 100, 275
MspR9I CCNGG 1 cut(s) 100
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 414, 423
NciI CCSGG 1 cut(s) 100
NcoI CCATGG 1 cut(s) 433
NdeI CATATG 1 cut(s) 157
NdeII GATC 1 cut(s) 106
NlaIII CATG 3 cut(s) 205, 437, 556
PfeI GAWTC 2 cut(s) 167, 505
PflFI GACNNNGTC 1 cut(s) 520
PkrI GCNGC 7 cut(s) 309, 407, 410, 428, 455, 490, 544
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 520
RsaI GTAC 5 cut(s) 13, 116, 128, 154, 273
RsaNI GTAC 5 cut(s) 12, 115, 127, 153, 272
SacII CCGCGG 1 cut(s) 409
SatI GCNGC 7 cut(s) 308, 406, 409, 427, 454, 489, 543
Sau3AI GATC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 100
Sfr303I CCGCGG 1 cut(s) 409
SgrBI CCGCGG 1 cut(s) 409
SmlI CTYRAG 2 cut(s) 110, 119
SmoI CTYRAG 2 cut(s) 110, 119
Sse9I AATT 3 cut(s) 50, 287, 351
SsiI CCGC 5 cut(s) 406, 408, 427, 454, 543
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 98
StyI CCWWGG 1 cut(s) 433
TaaI ACNGT 1 cut(s) 82
TasI AATT 3 cut(s) 50, 287, 351
TatI WGTACW 2 cut(s) 11, 152
TauI GCSGC 5 cut(s) 408, 411, 429, 456, 545
TfiI GAWTC 2 cut(s) 167, 505
TscAI CASTG 3 cut(s) 85, 454, 552
TseI GCWGC 2 cut(s) 307, 488
TspDTI ATGAA 5 cut(s) 234, 367, 381, 405, 492
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 3 cut(s) 85, 454, 552
Tth111I GACNNNGTC 1 cut(s) 520
XapI RAATTY 1 cut(s) 287
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.