Rmu_sc0002170.1_g000040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002170.1
OG0000560
Physical Location & Seq
Reverse (-)
177746 .. 179896
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002170.1_g000040.1.cds

Sequence Viewer

Length: 654 bp
atgaaggttgacaccaacccgtttcctgaagctcaagtgaacatggtgtatgtcagagtccccaaggatggggatgctccaaacaaaacagcggattctagcaagactactggtaaggccgaggctgacaaacagagattcaggtctcaagttaccacaaagcggccattgaccccggatgcatcggacaagtttggtccacacagtccaaggggaagtccgaatgttaagggacttaggagaatgaaggagtatccccaaaagaattctgctcttacattgtacagaccaacaaacaaggagatggatagagacctgaagtatttgaagaagttccatcagatccaatctgcagtcaagatatatgggatgactactcaagaaagagagctgatgaaacgtttcgaccaccatgtccgagaagaagaaaatagtcagcaagctcaagcaaaccaagacttggccaaatggttagaagacactaacacaaatgataaacaagaccagcatttagatgacttggatcttgaagtcgatggccagggtgataagggcatattggaggatgatgaaggcatattagatgaggaaatgggggattataatgacataggggattatgaagaacaggttgactacgatgatgccgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.94

Weight (kDa)

4.84

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 603
AasI GACNNNNNNGTC 1 cut(s) 413
AccB7I CCANNNNNTGG 1 cut(s) 460
AciI CCGC 2 cut(s) 92, 163
AclI AACGTT 1 cut(s) 400
AclWI GGATC 2 cut(s) 337, 531
AcoI YGGCCR 3 cut(s) 164, 462, 538
AcsI RAATTY 1 cut(s) 265
AcuI CTGAAG 2 cut(s) 48, 338
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 4 cut(s) 68, 69, 162, 460
AgsI TTSAA 2 cut(s) 328, 530
AjnI CCWGG 1 cut(s) 540
AluBI AGCT 3 cut(s) 32, 391, 443
AluI AGCT 3 cut(s) 32, 391, 443
Alw26I GTCTC 2 cut(s) 150, 306
AlwI GGATC 2 cut(s) 337, 531
AoxI GGCC 4 cut(s) 117, 164, 462, 538
ApoI RAATTY 1 cut(s) 265
Asp700I GAANNNNTTC 2 cut(s) 332, 401
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 557
AvaII GGWCC 1 cut(s) 197
BalI TGGCCA 2 cut(s) 464, 540
BbsI GAAGAC 1 cut(s) 483
BccI CCATC 4 cut(s) 62, 298, 345, 530
BciT130I CCWGG 1 cut(s) 542
BciVI GTATCC 1 cut(s) 264
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 150, 306
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 351
BfuI GTATCC 1 cut(s) 264
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 2 cut(s) 176, 542
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmrFI CCNGG 2 cut(s) 176, 542
BmsI GCATC 4 cut(s) 64, 169, 191, 634
BpiI GAAGAC 1 cut(s) 483
BpuEI CTTGAG 4 cut(s) 18, 132, 363, 429
BpuMI CCSGG 1 cut(s) 176
BsaI GGTCTC 2 cut(s) 150, 306
BsaJI CCNNGG 5 cut(s) 63, 120, 174, 209, 541
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 69, 162, 460
Bse1I ACTGG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 542
BseDI CCNNGG 5 cut(s) 63, 120, 174, 209, 541
BseGI GGATG 5 cut(s) 73, 79, 184, 375, 571
BseLI CCNNNNNNNGG 4 cut(s) 68, 69, 162, 460
BseNI ACTGG 1 cut(s) 115
BshFI GGCC 4 cut(s) 119, 166, 464, 540
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 2 cut(s) 44, 246
BslI CCNNNNNNNGG 4 cut(s) 68, 69, 162, 460
BsmAI GTCTC 2 cut(s) 150, 306
BsmFI GGGAC 2 cut(s) 44, 246
BsnI GGCC 4 cut(s) 119, 166, 464, 540
Bso31I GGTCTC 2 cut(s) 150, 306
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 2 cut(s) 342, 523
BspACI CCGC 2 cut(s) 92, 163
BspANI GGCC 4 cut(s) 119, 166, 464, 540
BspMAI CTGCAG 1 cut(s) 355
BspPI GGATC 2 cut(s) 337, 531
BspTNI GGTCTC 2 cut(s) 150, 306
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 5 cut(s) 63, 120, 174, 209, 541
BssMI GATC 2 cut(s) 342, 523
BssT1I CCWWGG 2 cut(s) 63, 209
Bst2UI CCWGG 1 cut(s) 542
Bst4CI ACNGT 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 1 cut(s) 236
BstF5I GGATG 5 cut(s) 73, 79, 184, 375, 571
BstKTI GATC 2 cut(s) 345, 526
BstMAI GTCTC 2 cut(s) 150, 306
BstMBI GATC 2 cut(s) 342, 523
BstNI CCWGG 1 cut(s) 542
BstSCI CCNGG 2 cut(s) 174, 540
BstSFI CTRYAG 1 cut(s) 351
BstV2I GAAGAC 1 cut(s) 483
BstX2I RGATCY 2 cut(s) 342, 523
BstYI RGATCY 2 cut(s) 342, 523
BsuI GTATCC 1 cut(s) 264
BsuRI GGCC 4 cut(s) 119, 166, 464, 540
BtsCI GGATG 5 cut(s) 73, 79, 184, 375, 571
Cac8I GCNNGC 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 283
CviAII CATG 2 cut(s) 43, 413
CviJI RGCY 8 cut(s) 32, 119, 125, 166, 391, 443, 464, 540
CviKI_1 RGCY 8 cut(s) 32, 119, 125, 166, 391, 443, 464, 540
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 1 cut(s) 236
DpnI GATC 2 cut(s) 344, 525
DpnII GATC 2 cut(s) 342, 523
DrdI GACNNNNNNGTC 1 cut(s) 413
DseDI GACNNNNNNGTC 1 cut(s) 413
EaeI YGGCCR 3 cut(s) 164, 462, 538
Eco130I CCWWGG 2 cut(s) 63, 209
Eco31I GGTCTC 2 cut(s) 150, 306
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 48, 338
EcoRI GAATTC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 540
EcoT14I CCWWGG 2 cut(s) 63, 209
EcoT22I ATGCAT 1 cut(s) 184
ErhI CCWWGG 2 cut(s) 63, 209
FaeI CATG 2 cut(s) 46, 416
FaqI GGGAC 2 cut(s) 44, 246
FatI CATG 2 cut(s) 42, 412
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 5 cut(s) 80, 86, 191, 382, 578
Fsp4HI GCNGC 1 cut(s) 164
FspBI CTAG 1 cut(s) 99
GluI GCNGC 1 cut(s) 164
HaeIII GGCC 4 cut(s) 119, 166, 464, 540
HapII CCGG 1 cut(s) 176
Hin1II CATG 2 cut(s) 46, 416
HincII GTYRAC 2 cut(s) 10, 634
HindII GTYRAC 2 cut(s) 10, 634
HinfI GANTC 3 cut(s) 57, 95, 138
HpaII CCGG 1 cut(s) 176
HphI GGTGA 1 cut(s) 557
Hpy166II GTNNAC 4 cut(s) 10, 40, 200, 634
Hpy188I TCNGA 5 cut(s) 56, 187, 222, 342, 419
Hpy188III TCNNGA 4 cut(s) 26, 358, 380, 527
Hpy8I GTNNAC 4 cut(s) 10, 40, 200, 634
HpyAV CCTTC 2 cut(s) 241, 566
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 400
HpyCH4V TGCA 2 cut(s) 182, 353
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 1 cut(s) 400
Hsp92II CATG 2 cut(s) 46, 416
Kzo9I GATC 2 cut(s) 342, 523
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 9 cut(s) 39, 96, 127, 189, 329, 518, 527, 554, 614
LweI GCATC 4 cut(s) 64, 169, 191, 634
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 400
MaeIII GTNAC 1 cut(s) 151
MalI GATC 2 cut(s) 344, 525
MboI GATC 2 cut(s) 342, 523
MboII GAAGA 5 cut(s) 340, 434, 437, 488, 635
MflI RGATCY 2 cut(s) 342, 523
MlsI TGGCCA 2 cut(s) 464, 540
MluCI AATT 1 cut(s) 265
MluNI TGGCCA 2 cut(s) 464, 540
MlyI GAGTC 1 cut(s) 66
MnlI CCTC 3 cut(s) 115, 556, 580
Mox20I TGGCCA 2 cut(s) 464, 540
Mph1103I ATGCAT 1 cut(s) 184
MroXI GAANNNNTTC 2 cut(s) 332, 401
MscI TGGCCA 2 cut(s) 464, 540
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 1 cut(s) 513
Msp20I TGGCCA 2 cut(s) 464, 540
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 2 cut(s) 176, 542
MvaI CCWGG 1 cut(s) 542
NciI CCSGG 1 cut(s) 176
NdeII GATC 2 cut(s) 342, 523
NlaIII CATG 2 cut(s) 46, 416
NmeAIII GCCGAG 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 184
PcsI WCGNNNNNNNCGW 1 cut(s) 645
PdmI GAANNNNTTC 2 cut(s) 332, 401
PfeI GAWTC 2 cut(s) 95, 138
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 1 cut(s) 165
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PsiI TTATAA 1 cut(s) 603
Psp1406I AACGTT 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 540
PspGI CCWGG 1 cut(s) 540
PspPI GGNCC 1 cut(s) 197
PstI CTGCAG 1 cut(s) 355
PsuI RGATCY 2 cut(s) 342, 523
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 2 cut(s) 342, 523
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 2 cut(s) 176, 542
SetI ASST 8 cut(s) 9, 34, 146, 318, 393, 403, 445, 633
SfaNI GCATC 4 cut(s) 64, 169, 191, 634
SfcI CTRYAG 1 cut(s) 351
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 4 cut(s) 33, 147, 378, 444
SmoI CTYRAG 4 cut(s) 33, 147, 378, 444
Sse9I AATT 1 cut(s) 265
SsiI CCGC 2 cut(s) 92, 163
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 2 cut(s) 174, 540
StyI CCWWGG 2 cut(s) 63, 209
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 403
TaqI TCGA 2 cut(s) 405, 534
TasI AATT 1 cut(s) 265
TatI WGTACW 1 cut(s) 282
TauI GCSGC 1 cut(s) 166
TfiI GAWTC 2 cut(s) 95, 138
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TspDTI ATGAA 5 cut(s) 17, 260, 410, 585, 636
Van91I CCANNNNNTGG 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 265
XmnI GAANNNNTTC 2 cut(s) 332, 401
XspI CTAG 1 cut(s) 99
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.