Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000560

Physical Location & Seq

Genomic Coordinates Reverse (-)

73997280 .. 74000515

Gene Structure 3236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG430300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCCGACGTCGCCACCCTGTCGTGTGCTCGTTGCAGCAAACCCACCAATCTTCAGTGTCCCAAGTGTGTGGAATTGAAGCTTCCTCGTGAAGATGCCGCTTTCTGGACATTGAGACCATATCCTATATCTAGTAAGCGTGTGGTACCTTCTCATATTAATCTACCTGATTGGGCAGATGATGGAATCCCAAAAGAGGAACCCAGTAGTGACCTGCAGCGTGTTGTTGAGATCAAAACTCCAAATCAAATTGAGAGGATGCGAGAAACTTGTCGAGACAATGAGTTGGTTCGGTTGAAGCGTGAAGCAAGGCTGAAAGGAGGATTCTATGTCAAGCCAGAGTCTAAGCTTTCATTTATCATTCGTATCCATGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

125

Amino Acids

14.33

Weight (kDa)

9.08

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis	pycom11g14070
rosa_chinensis	RchiOBHm_Chr6g0263201
rosa_laevigata	RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora	Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha	Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
Acc36I	ACCTGC	1 cut(s)	222
Acc65I	GGTACC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	145
AciI	CCGC	1 cut(s)	99
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	105, 196
AgsI	TTSAA	2 cut(s)	79, 298
AluBI	AGCT	2 cut(s)	82, 349
AluI	AGCT	2 cut(s)	82, 349
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	2 cut(s)	109, 270
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	36, 217
AseI	ATTAAT	1 cut(s)	159
Asp718I	GGTACC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	145
BauI	CACGAG	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	48, 229
BccI	CCATC	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	377
BcoDI	GTCTC	2 cut(s)	109, 270
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	377
BisI	GCNGC	3 cut(s)	37, 99, 218
BlsI	GCNGC	3 cut(s)	38, 100, 219
BmiI	GGNNCC	2 cut(s)	147, 201
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	2 cut(s)	85, 249
BmuI	ACTGGG	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 196
Bse1I	ACTGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	2 cut(s)	105, 196
BseNI	ACTGG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	48, 229
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	31
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	2 cut(s)	105, 196
BsmAI	GTCTC	2 cut(s)	109, 270
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	231
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	147, 201
BspMAI	CTGCAG	1 cut(s)	219
BspMI	ACCTGC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	145
BspTNI	GGTCTC	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	1 cut(s)	231
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	87
BstACI	GRCGYC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	345
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	1 cut(s)	264
BstKTI	GATC	1 cut(s)	234
BstMAI	GTCTC	2 cut(s)	109, 270
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	48, 229
BstXI	CCANNNNNNTGG	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	62
BveI	ACCTGC	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	1 cut(s)	371
CviJI	RGCY	5 cut(s)	5, 82, 313, 337, 349
CviKI_1	RGCY	5 cut(s)	5, 82, 313, 337, 349
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	370
Eco31I	GGTCTC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	1 cut(s)	374
FaiI	YATR	5 cut(s)	121, 128, 156, 330, 372
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	1 cut(s)	370
Fnu4HI	GCNGC	3 cut(s)	37, 99, 218
FokI	GGATG	1 cut(s)	271
Fsp4HI	GCNGC	3 cut(s)	37, 99, 218
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	3 cut(s)	37, 99, 218
HaeIII	GGCC	1 cut(s)	5
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	374
HindIII	AAGCTT	2 cut(s)	80, 347
HinfI	GANTC	3 cut(s)	186, 324, 341
Hpy188III	TCNNGA	3 cut(s)	89, 106, 275
Hpy99I	CGWCG	2 cut(s)	11, 14
HpyAV	CCTTC	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	2 cut(s)	36, 217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	374
KpnI	GGTACC	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	231
LpnPI	CCDG	6 cut(s)	32, 91, 180, 217, 227, 351
Lsp1109I	GCAGC	2 cut(s)	48, 229
LweI	GCATC	2 cut(s)	85, 249
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	2 cut(s)	44, 104
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	2 cut(s)	74, 249
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	4 cut(s)	96, 190, 249, 314
MseI	TTAA	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	1 cut(s)	374
NlaIV	GGNNCC	2 cut(s)	147, 201
NmuCI	GTSAC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	186, 324
PkrI	GCNGC	3 cut(s)	38, 100, 219
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PshBI	ATTAAT	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	147, 201
PstI	CTGCAG	1 cut(s)	219
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	3 cut(s)	37, 99, 218
Sau3AI	GATC	1 cut(s)	231
SchI	GAGTC	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	6 cut(s)	12, 84, 151, 169, 216, 351
SfaNI	GCATC	2 cut(s)	85, 249
SfcI	CTRYAG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	74, 249
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	370
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	274
TasI	AATT	2 cut(s)	74, 249
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	186, 324
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	2 cut(s)	36, 217
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	62
VspI	ATTAAT	1 cut(s)	159
XspI	CTAG	1 cut(s)	132
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.