Rh2BG612500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000560
Physical Location & Seq
Reverse (-)
83413513 .. 83418285
4773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG612500.1

Sequence Viewer

Length: 576 bp
ATGGATGAACGCATTCGGCAGCGGGAGATTGAGTATGCAGCAGTAAGTAAGGAAGACTCTGACTTTGAGTTGAGTGATGGGCCAGAAGATATGGTCACCGACTTCTATGAAAGTCAGCAAGGAGCCATCTTTCATGCGGCCGAGGTTGAAAATTCACAATCCCAAGTTCAGGGTAAGAAATTTGAAATTAAAGATGAACAAGCAATGATTGATGTCGAAGATCAAGAGGGTGACAAGCGCAATCAGGATTTTGCTGAGGGTCGGGTTTTTGAAGGAGGAGCAGAGTACAACAATCATGGGTTAGGTGAGGTAAGAGAAGCTGAGATGAATATGGTTTATATCTTGCCTATTGATTTCCTTGCACAGCCGGATCAGCCGAATACAATGGAAGGAGATGTTGAAGATAGAATTTTGCCTAGAGTTTCAATTCAGGAACAGCCTCAAGCTCACTTCCAGAAGCCAACGCAAGAGATGGATAGGTTGGTTGATAATAATCTGGCAGTGAGACAAGACAGGTTGGTTGATAATTTGACCAAGGTTCTAGCTGAGGTTTGGCTAAGCTTAGCCGTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.89

Weight (kDa)

4.25

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 22, 137
AclWI GGATC 1 cut(s) 378
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 3 cut(s) 151, 179, 408
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 5 cut(s) 149, 185, 272, 401, 426
AluBI AGCT 4 cut(s) 320, 446, 545, 561
AluI AGCT 4 cut(s) 320, 446, 545, 561
Alw26I GTCTC 1 cut(s) 499
AlwI GGATC 1 cut(s) 378
AoxI GGCC 2 cut(s) 80, 138
ApeKI GCWGC 2 cut(s) 19, 38
ApoI RAATTY 3 cut(s) 151, 179, 408
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
Asp700I GAANNNNTTC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 3 cut(s) 88, 242, 317
BbsI GAAGAC 1 cut(s) 60
BbvCI CCTCAGC 2 cut(s) 255, 546
BbvI GCAGC 2 cut(s) 31, 50
BccI CCATC 3 cut(s) 71, 134, 466
BceAI ACGGC 1 cut(s) 551
BcoDI GTCTC 1 cut(s) 499
BfaI CTAG 2 cut(s) 417, 542
BisI GCNGC 3 cut(s) 20, 39, 138
BlpI GCTNAGC 2 cut(s) 557, 562
BlsI GCNGC 3 cut(s) 21, 40, 139
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 60
Bpu10I CCTNAGC 2 cut(s) 255, 546
Bpu1102I GCTNAGC 2 cut(s) 557, 562
BpuEI CTTGAG 1 cut(s) 426
BsaBI GATNNNNATC 1 cut(s) 492
BsaJI CCNNGG 3 cut(s) 141, 534, 567
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 492
BseDI CCNNGG 3 cut(s) 141, 534, 567
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 3 cut(s) 246, 312, 537
BseRI GAGGAG 1 cut(s) 291
BseX3I CGGCCG 1 cut(s) 138
BseXI GCAGC 2 cut(s) 31, 50
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 2 cut(s) 82, 140
BsiEI CGRYCG 1 cut(s) 141
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 499
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 2 cut(s) 82, 140
Bsp143I GATC 2 cut(s) 220, 370
Bsp1720I GCTNAGC 2 cut(s) 557, 562
BspACI CCGC 2 cut(s) 22, 137
BspANI GGCC 2 cut(s) 82, 140
BspCNI CTCAG 3 cut(s) 247, 313, 538
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 1 cut(s) 378
BsrDI GCAATG 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 141, 534, 567
BssMI GATC 2 cut(s) 220, 370
BssT1I CCWWGG 1 cut(s) 534
BstDEI CTNAG 5 cut(s) 255, 321, 546, 557, 562
BstDSI CCRYGG 1 cut(s) 567
BstEII GGTNACC 1 cut(s) 94
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 2 cut(s) 223, 373
BstMAI GTCTC 1 cut(s) 499
BstMBI GATC 2 cut(s) 220, 370
BstMCI CGRYCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstPI GGTNACC 1 cut(s) 94
BstV1I GCAGC 2 cut(s) 31, 50
BstV2I GAAGAC 1 cut(s) 60
BstZI CGGCCG 1 cut(s) 138
BsuRI GGCC 2 cut(s) 82, 140
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 1 cut(s) 507
CfoI GCGC 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 286
CviAII CATG 2 cut(s) 134, 296
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 5 cut(s) 255, 321, 546, 557, 562
DpnI GATC 2 cut(s) 222, 372
DpnII GATC 2 cut(s) 220, 370
EaeI YGGCCR 1 cut(s) 138
EagI CGGCCG 1 cut(s) 138
EclXI CGGCCG 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 534
Eco52I CGGCCG 1 cut(s) 138
Eco91I GGTNACC 1 cut(s) 94
EcoO65I GGTNACC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 2 cut(s) 137, 299
FaiI YATR 7 cut(s) 36, 92, 108, 135, 297, 332, 339
FatI CATG 2 cut(s) 133, 295
FauI CCCGC 1 cut(s) 15
Fnu4HI GCNGC 3 cut(s) 20, 39, 138
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 20, 39, 138
FspBI CTAG 2 cut(s) 417, 542
GlaI GCGC 1 cut(s) 239
GluI GCNGC 3 cut(s) 20, 39, 138
HaeIII GGCC 2 cut(s) 82, 140
HapII CCGG 1 cut(s) 368
HhaI GCGC 1 cut(s) 240
Hin1II CATG 2 cut(s) 137, 299
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 559
HinfI GANTC 1 cut(s) 56
HpaII CCGG 1 cut(s) 368
HphI GGTGA 3 cut(s) 88, 242, 317
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 4 cut(s) 224, 245, 431, 454
HpyAV CCTTC 2 cut(s) 266, 383
HpyCH4V TGCA 2 cut(s) 38, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 5 cut(s) 255, 321, 546, 557, 562
Hsp92II CATG 2 cut(s) 137, 299
HspAI GCGC 1 cut(s) 238
Kzo9I GATC 2 cut(s) 220, 370
LmnI GCTCC 2 cut(s) 122, 278
LpnPI CCDG 8 cut(s) 96, 155, 230, 381, 416, 467, 482, 499
Lsp1109I GCAGC 2 cut(s) 31, 50
MaeI CTAG 2 cut(s) 417, 542
MaeIII GTNAC 2 cut(s) 94, 230
MalI GATC 2 cut(s) 222, 372
MboI GATC 2 cut(s) 220, 370
MboII GAAGA 4 cut(s) 65, 98, 230, 413
MluCI AATT 6 cut(s) 151, 179, 186, 408, 426, 526
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 7 cut(s) 136, 220, 250, 269, 301, 450, 541
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 22
MspI CCGG 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 373
NdeII GATC 2 cut(s) 220, 370
NlaIII CATG 2 cut(s) 137, 299
NlaIV GGNNCC 1 cut(s) 124
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 2 cut(s) 94, 230
PctI GAATGC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 12
PkrI GCNGC 3 cut(s) 21, 40, 139
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PspEI GGTNACC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 80
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 3 cut(s) 20, 39, 138
Sau3AI GATC 2 cut(s) 220, 370
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 6 cut(s) 151, 179, 186, 408, 426, 526
SsiI CCGC 2 cut(s) 22, 137
SspMI CTAG 2 cut(s) 417, 542
StyI CCWWGG 1 cut(s) 534
TaqI TCGA 1 cut(s) 216
TasI AATT 6 cut(s) 151, 179, 186, 408, 426, 526
TatI WGTACW 1 cut(s) 285
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 507
TseFI GTSAC 2 cut(s) 94, 230
TseI GCWGC 2 cut(s) 19, 38
Tsp45I GTSAC 2 cut(s) 94, 230
TspDTI ATGAA 5 cut(s) 21, 122, 123, 210, 341
TspRI CASTG 1 cut(s) 507
XapI RAATTY 3 cut(s) 151, 179, 408
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 2 cut(s) 417, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.