Rroxscaffold_2G00123430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000560
Physical Location & Seq
Reverse (-)
57260249 .. 57261415
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123430.1

Sequence Viewer

Length: 507 bp
ATGGTGAAGAATGAAAGAAAGGAAACACGGGGAGGGAAACATGCCGGCAATGAATTAGGGACTCCCGCGGCCAACTCGGCCGATCGGAATGAAGTACTTAAGCTTTTTGGCCCTCACGGTCCCAAGGGATTTCATCGGGGACAACAAACTTCCCAAAGTGTTTTTAAGAGGATAAAGGAAATTGAAAACGCCGAGAGCGGACGACTTTCGGTGAGGAGGAGGTTGACTTTTGAGGATGATGATCTAGAGGGAAATTTTGTCGACGGTTTCAATGGCCGACGACGATCGGGTTTTGACCAAGATGATCGATTTTATGACCAAGATTACTTTGCTAGAAACAAAGGCCAGGTCCAGCTCGTAAGAGAACTAGATGATTATTTAGAAAAGAAAGACTTCGCAACCGAAGAGCAAGCGAAGGCCGATGCCAAAGCTAAGGATATTGAACAGTTGAAGGAAATACATAAGGCGGCTAAGGATAAAACACCAAATGGGAAAGCCCCACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

19.11

Weight (kDa)

8.71

Isoelectric Point (pI)

49.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 198
AccI GTMKAC 1 cut(s) 261
AccII CGCG 1 cut(s) 68
AciI CCGC 4 cut(s) 66, 68, 198, 467
AcoI YGGCCR 3 cut(s) 69, 78, 274
AcsI RAATTY 1 cut(s) 253
AfaI GTAC 1 cut(s) 96
AflII CTTAAG 1 cut(s) 98
AgsI TTSAA 4 cut(s) 185, 271, 443, 451
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 3 cut(s) 103, 355, 431
AluI AGCT 3 cut(s) 103, 355, 431
AoxI GGCC 6 cut(s) 69, 78, 109, 274, 343, 417
ApoI RAATTY 1 cut(s) 253
ArsI GACNNNNNNTTYG 2 cut(s) 333, 365
Asp700I GAANNNNTTC 1 cut(s) 392
AspS9I GGNCC 3 cut(s) 110, 119, 349
AsuHPI GGTGA 2 cut(s) 16, 223
AvaII GGWCC 2 cut(s) 119, 349
BciT130I CCWGG 1 cut(s) 347
BfaI CTAG 3 cut(s) 245, 333, 368
BfrI CTTAAG 1 cut(s) 98
BglI GCCNNNNNGGC 1 cut(s) 77
BisI GCNGC 2 cut(s) 69, 468
BlsI GCNGC 2 cut(s) 70, 469
BmcAI AGTACT 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 2 cut(s) 119, 349
BmgT120I GGNCC 3 cut(s) 110, 119, 349
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 1 cut(s) 412
Bpu10I CCTNAGC 2 cut(s) 432, 471
Bsa29I ATCGAT 1 cut(s) 307
BsaBI GATNNNNATC 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 66, 123
Bse118I RCCGGY 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 55
Bse8I GATNNNNATC 1 cut(s) 240
BseBI CCWGG 1 cut(s) 347
BseCI ATCGAT 1 cut(s) 307
BseDI CCNNGG 2 cut(s) 66, 123
BseGI GGATG 1 cut(s) 241
BseJI GATNNNNATC 1 cut(s) 240
BseMI GCAATG 1 cut(s) 55
BseRI GAGGAG 2 cut(s) 229, 232
BseX3I CGGCCG 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 68
Bsh1285I CGRYCG 3 cut(s) 81, 85, 287
BshFI GGCC 6 cut(s) 71, 80, 111, 276, 345, 419
BshVI ATCGAT 1 cut(s) 307
BsiEI CGRYCG 3 cut(s) 81, 85, 287
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 3 cut(s) 73, 105, 153
BsmFI GGGAC 3 cut(s) 73, 105, 153
BsnI GGCC 6 cut(s) 71, 80, 111, 276, 345, 419
Bsp143I GATC 4 cut(s) 82, 241, 284, 304
BspACI CCGC 4 cut(s) 66, 68, 198, 467
BspANI GGCC 6 cut(s) 71, 80, 111, 276, 345, 419
BspDI ATCGAT 1 cut(s) 307
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 121
BspQI GCTCTTC 1 cut(s) 399
BspTI CTTAAG 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 66, 123
BssMI GATC 4 cut(s) 82, 241, 284, 304
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 3 cut(s) 119, 266, 447
Bst6I CTCTTC 1 cut(s) 399
BstAFI CTTAAG 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 46, 411
BstDEI CTNAG 2 cut(s) 432, 471
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 241
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 4 cut(s) 85, 244, 287, 307
BstMBI GATC 4 cut(s) 82, 241, 284, 304
BstMCI CGRYCG 3 cut(s) 81, 85, 287
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 347
BstNSI RCATGY 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 345
BstUI CGCG 1 cut(s) 68
BstZI CGGCCG 1 cut(s) 78
Bsu15I ATCGAT 1 cut(s) 307
BsuRI GGCC 6 cut(s) 71, 80, 111, 276, 345, 419
BsuTUI ATCGAT 1 cut(s) 307
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 241
Cac8I GCNNGC 2 cut(s) 46, 411
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 3 cut(s) 110, 119, 349
Cfr42I CCGCGG 1 cut(s) 69
ClaI ATCGAT 1 cut(s) 307
Csp6I GTAC 1 cut(s) 95
CviAII CATG 1 cut(s) 41
CviQI GTAC 1 cut(s) 95
DdeI CTNAG 2 cut(s) 432, 471
DpnI GATC 4 cut(s) 84, 243, 286, 306
DpnII GATC 4 cut(s) 82, 241, 284, 304
EaeI YGGCCR 3 cut(s) 69, 78, 274
EagI CGGCCG 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
EclXI CGGCCG 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 119, 349
Eco52I CGGCCG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 44
FaiI YATR 4 cut(s) 42, 315, 462, 505
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 3 cut(s) 73, 105, 153
FatI CATG 1 cut(s) 40
FauI CCCGC 1 cut(s) 73
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 69, 468
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 2 cut(s) 69, 468
FspBI CTAG 3 cut(s) 245, 333, 368
GluI GCNGC 2 cut(s) 69, 468
HaeIII GGCC 6 cut(s) 71, 80, 111, 276, 345, 419
HapII CCGG 1 cut(s) 45
Hin1II CATG 1 cut(s) 44
HincII GTYRAC 2 cut(s) 225, 262
HindII GTYRAC 2 cut(s) 225, 262
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 1 cut(s) 61
HpaII CCGG 1 cut(s) 45
HphI GGTGA 2 cut(s) 16, 223
Hpy166II GTNNAC 2 cut(s) 225, 262
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 2 cut(s) 225, 262
Hpy99I CGWCG 3 cut(s) 266, 282, 285
HpyAV CCTTC 2 cut(s) 409, 445
HpyCH4III ACNGT 3 cut(s) 119, 266, 447
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 432, 471
Hsp92II CATG 1 cut(s) 44
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 4 cut(s) 82, 241, 284, 304
LguI GCTCTTC 1 cut(s) 399
LpnPI CCDG 4 cut(s) 58, 332, 359, 365
LweI GCATC 1 cut(s) 412
MaeI CTAG 3 cut(s) 245, 333, 368
MalI GATC 4 cut(s) 84, 243, 286, 306
MbiI CCGCTC 1 cut(s) 198
MboI GATC 4 cut(s) 82, 241, 284, 304
MboII GAAGA 2 cut(s) 19, 416
MluCI AATT 3 cut(s) 53, 180, 253
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 8 cut(s) 26, 123, 162, 207, 210, 213, 226, 241
MroNI GCCGGC 1 cut(s) 44
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 2 cut(s) 99, 165
MspA1I CMGCKG 1 cut(s) 68
MspCI CTTAAG 1 cut(s) 98
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 347
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 77
NaeI GCCGGC 1 cut(s) 46
NdeII GATC 4 cut(s) 82, 241, 284, 304
NgoMIV GCCGGC 1 cut(s) 44
NlaIII CATG 1 cut(s) 44
NlaIV GGNNCC 1 cut(s) 121
NmeAIII GCCGAG 2 cut(s) 56, 217
NspI RCATGY 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 399
PdiI GCCGGC 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 392
PkrI GCNGC 2 cut(s) 70, 469
Ple19I CGATCG 2 cut(s) 85, 287
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 3 cut(s) 110, 119, 349
PvuI CGATCG 2 cut(s) 85, 287
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
SacII CCGCGG 1 cut(s) 69
SalI GTCGAC 1 cut(s) 260
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 2 cut(s) 99, 165
SatI GCNGC 2 cut(s) 69, 468
Sau3AI GATC 4 cut(s) 82, 241, 284, 304
Sau96I GGNCC 3 cut(s) 110, 119, 349
ScaI AGTACT 1 cut(s) 96
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 347
SetI ASST 5 cut(s) 105, 224, 351, 357, 433
SfaNI GCATC 1 cut(s) 412
SfiI GGCCNNNNNGGCC 1 cut(s) 77
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SinI GGWCC 2 cut(s) 119, 349
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 3 cut(s) 53, 180, 253
SsiI CCGC 4 cut(s) 66, 68, 198, 467
SspMI CTAG 3 cut(s) 245, 333, 368
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 3 cut(s) 119, 266, 447
TaqI TCGA 2 cut(s) 261, 307
TasI AATT 3 cut(s) 53, 180, 253
TatI WGTACW 1 cut(s) 94
TauI GCSGC 2 cut(s) 71, 470
Tru1I TTAA 2 cut(s) 99, 165
Tru9I TTAA 2 cut(s) 99, 165
TspDTI ATGAA 4 cut(s) 27, 66, 105, 122
Vha464I CTTAAG 1 cut(s) 98
VpaK11BI GGWCC 2 cut(s) 119, 349
XapI RAATTY 1 cut(s) 253
XbaI TCTAGA 1 cut(s) 244
XceI RCATGY 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 3 cut(s) 245, 333, 368
ZrmI AGTACT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.