Rh2BG478200

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000560
Physical Location & Seq
Reverse (-)
67401797 .. 67402820
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG478200.1

Sequence Viewer

Length: 996 bp
ATGTCAACAACACCCCCAGAGCTGCACGCAAAGGGTGGGAGGAAAGTAACAAGTTATGTTCCTACTACAGAGAAAGCTCCAGCAACTACATCTAACAAGCTACGCCCAGGAGTCAAGGGAAACTATCAAGTTGAGAAGTTGAAAGTTGAAGTCCTGAGAAACAAGCTACCACCTTTTTCCTCGAAGAGTTGGACTACCATGAAGGAGTACCACAGGACTCAATCGGCTTTAGCTTTATATGGGCCGACGTGGGAAGAACTTGATACTATGAAGGCTTTAACAGAAAACCCAGGGCTTGAGCCTTTGATGGTGCAAAGTACATCAAGTGCAGGATTGAAGATTTTGTATCAGGCACAATTAGATGGTGTGGAGTTAGTGGCGGACACTGTTGATTTACCAGTATCCCAGCGAGATCTCAAGTATCTCAAGGAGTACCACAAAATGTATTCGGTTATCAGTACATATGGAGTAACTCCACAAGAGAGGAAGCTGTTGGTGAAGATGGAAGAACGCATTCGCCAACGGGAACTTGAATATGTTGTGGAGCTCGGCAAGGGAGATTCTGATTTTGAGTTGGAAGAGGAACTAGCAAACATGGACATAGACTGCAATAATACTCATCAACAAACCAGTTCTTTTGTGTGCGATGGAAAAGCAAACCAAGTACCGGCTGATGGAAAATTCCATATTGAAGATGAGCAGCCAATGATTGAGGTAGAAGAAGAGCCAGAGTTTGAGAAGCCAACTGATGTTAGCTTTAAAGAAGATTTCATTATCTGTGATGAAGATCTCACTGGTCGCGGCGGAAGCTTTAATAGCCGCGACCATGATAAAGACCTCATTGGCCGCGGCGAAAGTTTCGATAGCCGCGACCATGGTGAAGACCTCACCGGCCACTGTGAAGGAGGTGAGGTGGATAAAGGAGTTGTAGCATCATCATCGCTGAATCGGGAAATGACATTGCCAGATAATGGAGGAGAGGCCGTGATTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

331

Amino Acids

37.06

Weight (kDa)

4.78

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 971
AccII CGCG 4 cut(s) 801, 822, 849, 870
AciI CCGC 7 cut(s) 380, 801, 804, 820, 847, 849, 868
AcoI YGGCCR 2 cut(s) 844, 892
AcsI RAATTY 1 cut(s) 680
AfaI GTAC 5 cut(s) 209, 319, 434, 460, 666
AfiI CCNNNNNNNGG 3 cut(s) 667, 674, 971
AgsI TTSAA 5 cut(s) 142, 149, 337, 533, 692
AjiI CACGTC 1 cut(s) 249
AjnI CCWGG 2 cut(s) 106, 289
AluBI AGCT 9 cut(s) 22, 77, 100, 166, 233, 490, 547, 756, 810
AluI AGCT 9 cut(s) 22, 77, 100, 166, 233, 490, 547, 756, 810
Alw21I GWGCWC 1 cut(s) 549
AoxI GGCC 4 cut(s) 242, 844, 892, 981
ApeKI GCWGC 2 cut(s) 22, 700
ApoI RAATTY 1 cut(s) 680
Asp700I GAANNNNTTC 1 cut(s) 513
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 4 cut(s) 508, 880, 890, 920
BanII GRGCYC 1 cut(s) 549
BbsI GAAGAC 1 cut(s) 888
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 2 cut(s) 9, 712
BccI CCATC 5 cut(s) 301, 356, 496, 641, 668
BceAI ACGGC 1 cut(s) 968
BcgI CGANNNNNNTGC 2 cut(s) 921, 955
BciT130I CCWGG 2 cut(s) 108, 291
BciVI GTATCC 1 cut(s) 412
BfaI CTAG 1 cut(s) 587
BfmI CTRYAG 1 cut(s) 66
BfuI GTATCC 1 cut(s) 412
BglII AGATCT 2 cut(s) 412, 787
BisI GCNGC 7 cut(s) 23, 701, 802, 820, 847, 850, 868
BlsI GCNGC 7 cut(s) 24, 702, 803, 821, 848, 851, 869
Bme1390I CCNGG 2 cut(s) 108, 291
BmgBI CACGTC 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 242
BmrFI CCNGG 2 cut(s) 108, 291
BmsI GCATC 1 cut(s) 941
BpiI GAAGAC 1 cut(s) 888
BpmI CTGGAG 1 cut(s) 63
BpuEI CTTGAG 3 cut(s) 317, 401, 410
BsaBI GATNNNNATC 1 cut(s) 786
BsaJI CCNNGG 5 cut(s) 106, 289, 290, 847, 874
BsaXI ACNNNNNCTCC 3 cut(s) 897, 927, 969
Bsc4I CCNNNNNNNGG 3 cut(s) 667, 674, 971
Bse118I RCCGGY 2 cut(s) 667, 890
Bse1I ACTGG 3 cut(s) 398, 630, 799
Bse3DI GCAATG 1 cut(s) 959
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 2 cut(s) 108, 291
BseDI CCNNGG 5 cut(s) 106, 289, 290, 847, 874
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 3 cut(s) 667, 674, 971
BseMI GCAATG 1 cut(s) 959
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 3 cut(s) 398, 630, 799
BseRI GAGGAG 1 cut(s) 990
BseXI GCAGC 2 cut(s) 9, 712
BseYI CCCAGC 1 cut(s) 405
BsgI GTGCAG 2 cut(s) 8, 348
Bsh1236I CGCG 4 cut(s) 801, 822, 849, 870
BshFI GGCC 4 cut(s) 244, 846, 894, 983
BsiHKAI GWGCWC 1 cut(s) 549
BsiSI CCGG 2 cut(s) 668, 891
BslI CCNNNNNNNGG 3 cut(s) 667, 674, 971
BsmI GAATGC 1 cut(s) 513
BsnI GGCC 4 cut(s) 244, 846, 894, 983
Bsp1286I GDGCHC 1 cut(s) 549
Bsp143I GATC 2 cut(s) 412, 787
Bsp19I CCATGG 1 cut(s) 874
BspACI CCGC 7 cut(s) 380, 801, 804, 820, 847, 849, 868
BspANI GGCC 4 cut(s) 244, 846, 894, 983
BspCNI CTCAG 1 cut(s) 147
BspFNI CGCG 4 cut(s) 801, 822, 849, 870
BspQI GCTCTTC 1 cut(s) 717
BsrDI GCAATG 1 cut(s) 959
BsrFI RCCGGY 2 cut(s) 667, 890
BsrI ACTGG 3 cut(s) 398, 630, 799
BssAI RCCGGY 2 cut(s) 667, 890
BssECI CCNNGG 5 cut(s) 106, 289, 290, 847, 874
BssMI GATC 2 cut(s) 412, 787
BssT1I CCWWGG 1 cut(s) 874
Bst2UI CCWGG 2 cut(s) 108, 291
Bst4CI ACNGT 2 cut(s) 388, 899
Bst6I CTCTTC 3 cut(s) 179, 573, 717
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 155
BstDSI CCRYGG 2 cut(s) 847, 874
BstFNI CGCG 4 cut(s) 801, 822, 849, 870
BstKTI GATC 2 cut(s) 415, 790
BstMBI GATC 2 cut(s) 412, 787
BstMWI GCNNNNNNNGC 2 cut(s) 807, 816
BstNI CCWGG 2 cut(s) 108, 291
BstSCI CCNGG 2 cut(s) 106, 289
BstSFI CTRYAG 1 cut(s) 66
BstUI CGCG 4 cut(s) 801, 822, 849, 870
BstV1I GCAGC 2 cut(s) 9, 712
BstV2I GAAGAC 1 cut(s) 888
BstX2I RGATCY 2 cut(s) 412, 787
BstYI RGATCY 2 cut(s) 412, 787
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 4 cut(s) 244, 846, 894, 983
BtgI CCRYGG 2 cut(s) 847, 874
BtgZI GCGATG 2 cut(s) 660, 924
BtrI CACGTC 1 cut(s) 249
BtsIMutI CAGTG 3 cut(s) 384, 792, 895
Cac8I GCNNGC 1 cut(s) 27
Cfr10I RCCGGY 2 cut(s) 667, 890
Cfr13I GGNCC 1 cut(s) 242
Cfr42I CCGCGG 1 cut(s) 850
Csp6I GTAC 5 cut(s) 208, 318, 433, 459, 665
CviAII CATG 4 cut(s) 199, 595, 827, 875
CviQI GTAC 5 cut(s) 208, 318, 433, 459, 665
DdeI CTNAG 1 cut(s) 155
DpnI GATC 2 cut(s) 414, 789
DpnII GATC 2 cut(s) 412, 787
DraI TTTAAA 1 cut(s) 760
EaeI YGGCCR 2 cut(s) 844, 892
Eam1104I CTCTTC 3 cut(s) 179, 573, 717
EarI CTCTTC 3 cut(s) 179, 573, 717
EciI GGCGGA 2 cut(s) 395, 819
Ecl136II GAGCTC 1 cut(s) 547
Eco130I CCWWGG 1 cut(s) 874
Eco24I GRGCYC 1 cut(s) 549
Eco53kI GAGCTC 1 cut(s) 547
EcoICRI GAGCTC 1 cut(s) 547
EcoRII CCWGG 2 cut(s) 106, 289
EcoT14I CCWWGG 1 cut(s) 874
EcoT38I GRGCYC 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 874
FaeI CATG 4 cut(s) 202, 598, 830, 878
FatI CATG 4 cut(s) 198, 594, 826, 874
FauNDI CATATG 1 cut(s) 463
Fnu4HI GCNGC 7 cut(s) 23, 701, 802, 820, 847, 850, 868
FriOI GRGCYC 1 cut(s) 549
Fsp4HI GCNGC 7 cut(s) 23, 701, 802, 820, 847, 850, 868
FspBI CTAG 1 cut(s) 587
GluI GCNGC 7 cut(s) 23, 701, 802, 820, 847, 850, 868
GsaI CCCAGC 1 cut(s) 409
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 4 cut(s) 244, 846, 894, 983
HapII CCGG 2 cut(s) 668, 891
Hin1II CATG 4 cut(s) 202, 598, 830, 878
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 808
HinfI GANTC 4 cut(s) 111, 217, 560, 946
HpaII CCGG 2 cut(s) 668, 891
HphI GGTGA 4 cut(s) 508, 880, 890, 920
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 565
Hpy188III TCNNGA 2 cut(s) 154, 950
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 3 cut(s) 196, 265, 896
HpyCH4III ACNGT 2 cut(s) 388, 899
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 4 cut(s) 25, 313, 329, 609
HpyF10VI GCNNNNNNNGC 2 cut(s) 807, 816
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 4 cut(s) 202, 598, 830, 878
KspI CCGCGG 1 cut(s) 850
Kzo9I GATC 2 cut(s) 412, 787
LguI GCTCTTC 1 cut(s) 717
LmnI GCTCC 2 cut(s) 82, 544
Lsp1109I GCAGC 2 cut(s) 9, 712
LweI GCATC 1 cut(s) 941
MaeI CTAG 1 cut(s) 587
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 2 cut(s) 46, 469
MalI GATC 2 cut(s) 414, 789
MboI GATC 2 cut(s) 412, 787
MflI RGATCY 2 cut(s) 412, 787
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 2 cut(s) 356, 680
MlyI GAGTC 2 cut(s) 120, 211
MmeI TCCRAC 2 cut(s) 170, 555
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 3 cut(s) 278, 759, 813
MspA1I CMGCKG 1 cut(s) 849
MspI CCGG 2 cut(s) 668, 891
MspR9I CCNGG 2 cut(s) 108, 291
Mva1269I GAATGC 1 cut(s) 513
MvaI CCWGG 2 cut(s) 108, 291
MvnI CGCG 4 cut(s) 801, 822, 849, 870
MwoI GCNNNNNNNGC 2 cut(s) 807, 816
NcoI CCATGG 1 cut(s) 874
NdeI CATATG 1 cut(s) 463
NdeII GATC 2 cut(s) 412, 787
NlaIII CATG 4 cut(s) 202, 598, 830, 878
NmeAIII GCCGAG 1 cut(s) 528
PasI CCCWGGG 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 717
PcsI WCGNNNNNNNCGW 1 cut(s) 867
PctI GAATGC 1 cut(s) 513
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 2 cut(s) 560, 946
PflMI CCANNNNNTGG 1 cut(s) 971
PkrI GCNGC 7 cut(s) 24, 702, 803, 821, 848, 851, 869
PleI GAGTC 2 cut(s) 119, 211
PpsI GAGTC 2 cut(s) 119, 211
Psp124BI GAGCTC 1 cut(s) 549
Psp6I CCWGG 2 cut(s) 106, 289
PspFI CCCAGC 1 cut(s) 405
PspGI CCWGG 2 cut(s) 106, 289
PspPI GGNCC 1 cut(s) 242
PsuI RGATCY 2 cut(s) 412, 787
RsaI GTAC 5 cut(s) 209, 319, 434, 460, 666
RsaNI GTAC 5 cut(s) 208, 318, 433, 459, 665
SacI GAGCTC 1 cut(s) 549
SacII CCGCGG 1 cut(s) 850
SapI GCTCTTC 1 cut(s) 717
SaqAI TTAA 3 cut(s) 278, 759, 813
SatI GCNGC 7 cut(s) 23, 701, 802, 820, 847, 850, 868
Sau3AI GATC 2 cut(s) 412, 787
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 2 cut(s) 120, 211
ScrFI CCNGG 2 cut(s) 108, 291
SduI GDGCHC 1 cut(s) 549
SfaNI GCATC 1 cut(s) 941
SfcI CTRYAG 1 cut(s) 66
Sfr303I CCGCGG 1 cut(s) 850
SgrBI CCGCGG 1 cut(s) 850
SmlI CTYRAG 3 cut(s) 296, 416, 425
SmoI CTYRAG 3 cut(s) 296, 416, 425
Sse9I AATT 2 cut(s) 356, 680
SsiI CCGC 7 cut(s) 380, 801, 804, 820, 847, 849, 868
SspMI CTAG 1 cut(s) 587
SstI GAGCTC 1 cut(s) 549
StyD4I CCNGG 2 cut(s) 106, 289
StyI CCWWGG 1 cut(s) 874
TaaI ACNGT 2 cut(s) 388, 899
TaiI ACGT 1 cut(s) 251
TaqI TCGA 2 cut(s) 182, 861
TasI AATT 2 cut(s) 356, 680
TatI WGTACW 2 cut(s) 317, 458
TauI GCSGC 5 cut(s) 804, 822, 849, 852, 870
TfiI GAWTC 2 cut(s) 560, 946
Tru1I TTAA 3 cut(s) 278, 759, 813
Tru9I TTAA 3 cut(s) 278, 759, 813
TscAI CASTG 3 cut(s) 391, 799, 902
TseI GCWGC 2 cut(s) 22, 700
TspDTI ATGAA 4 cut(s) 215, 284, 760, 798
TspRI CASTG 3 cut(s) 391, 799, 902
Van91I CCANNNNNTGG 1 cut(s) 971
XapI RAATTY 1 cut(s) 680
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.