Rh2BG612600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000560
Physical Location & Seq
Reverse (-)
83418700 .. 83418891
192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG612600.1

Sequence Viewer

Length: 192 bp
ATGTTCCAGGCAGCATGGGAAAGTTCATCTCCAACAATGTGCACACCGGAGGATAGCTCAGCCTTACCAGTGTCTGAGGAAGATTTACTGTATTTAACGGAGTACCATCAGCGCTATTCAGCTGAGGAGTTATACGGCCTTACTGAGGACGAGGAAGAACTAGCAGATGCATTTTATCGGTACATTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.31

Weight (kDa)

4.05

Isoelectric Point (pI)

84.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 104, 182
AfeI AGCGCT 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 145
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 2 cut(s) 57, 122
AluI AGCT 2 cut(s) 57, 122
Alw21I GWGCWC 1 cut(s) 44
Alw44I GTGCAC 1 cut(s) 40
AlwNI CAGNNNCTG 1 cut(s) 74
Aor51HI AGCGCT 1 cut(s) 113
AoxI GGCC 1 cut(s) 136
ApaLI GTGCAC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 44
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 114
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 8
BfaI CTAG 2 cut(s) 161, 190
BfoI RGCGCY 1 cut(s) 115
BisI GCNGC 1 cut(s) 12
BlpI GCTNAGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 8
BmsI GCATC 1 cut(s) 157
BplI GAGNNNNNCTC 2 cut(s) 41, 73
Bpu10I CCTNAGC 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 4 cut(s) 66, 72, 114, 135
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 44
BseXI GCAGC 1 cut(s) 23
BshFI GGCC 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 145
BsnI GGCC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 44
Bsp1720I GCTNAGC 1 cut(s) 58
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 4 cut(s) 67, 71, 115, 136
BsrI ACTGG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 90
BstDEI CTNAG 4 cut(s) 58, 75, 123, 144
BstENI CCTNNNNNAGG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 23
BsuRI GGCC 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 75
CaiI CAGNNNCTG 1 cut(s) 74
CfoI GCGC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 103, 181
CviAII CATG 1 cut(s) 15
CviJI RGCY 4 cut(s) 57, 62, 122, 138
CviKI_1 RGCY 4 cut(s) 57, 62, 122, 138
CviQI GTAC 2 cut(s) 103, 181
DdeI CTNAG 4 cut(s) 58, 75, 123, 144
Eco47III AGCGCT 1 cut(s) 113
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 6
EcoT22I ATGCAT 1 cut(s) 172
FaeI CATG 1 cut(s) 18
FaiI YATR 2 cut(s) 16, 133
FatI CATG 1 cut(s) 14
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 2 cut(s) 161, 190
GlaI GCGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 47
HhaI GCGC 1 cut(s) 114
Hin1II CATG 1 cut(s) 18
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HpaII CCGG 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4V TGCA 2 cut(s) 42, 170
HpyF3I CTNAG 4 cut(s) 58, 75, 123, 144
Hsp92II CATG 1 cut(s) 18
HspAI GCGC 1 cut(s) 112
LpnPI CCDG 3 cut(s) 20, 60, 81
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 157
MaeI CTAG 2 cut(s) 161, 190
MboII GAAGA 2 cut(s) 92, 167
MhlI GDGCHC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 5 cut(s) 43, 70, 118, 139, 145
Mph1103I ATGCAT 1 cut(s) 172
MseI TTAA 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 8
NlaIII CATG 1 cut(s) 18
NsiI ATGCAT 1 cut(s) 172
PkrI GCNGC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 2 cut(s) 104, 182
RsaNI GTAC 2 cut(s) 103, 181
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 1 cut(s) 44
SetI ASST 2 cut(s) 59, 124
SfaNI GCATC 1 cut(s) 157
SgeI CNNG 7 cut(s) 19, 20, 27, 59, 80, 163, 173
SspMI CTAG 2 cut(s) 161, 190
StyD4I CCNGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 90
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 1 cut(s) 75
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 15
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 75
VneI GTGCAC 1 cut(s) 40
XagI CCTNNNNNAGG 1 cut(s) 143
XspI CTAG 2 cut(s) 161, 190
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.