Rh6DG198700

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000560
Physical Location & Seq
Reverse (-)
35462053 .. 35473205
11153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG198700.1

Sequence Viewer

Length: 837 bp
ATGAAGGAGTACCACAAGACACATTCGGCTTTAGCTTTGTACGGGCCGACGTGGGAAGAACTAGATACTCTGAAAGCGTTAACAGAAAACCCAGGTCTTGAGCATCTAATGGTGCAAAGTACATCAAGTGCAGGTTTGAAGATTTTGTATCAAGCACAAATAGATGGTGTGGAGTTGGTAGCTGACACGGTGGATTTACCAGTATCCCAGCGAGATCTCAAGTATCTAAAGGAGTACCACAGAATGTACTCGGTTATCAGTACATATGGGGTAACTCCACAAGAGAGGAAGCTGCTATTGAAGATGGAAGAACGCATTCACCAACGAGAACTTGAGTACGCCGCGGAGCTGGGAAAAGGAGATAATGATTTTGAGTTGGAAGAAAAACTAGCGAACATGGACATAGACTGCAATGAAATTCATCAGCAAACCAGTTCCCTTGTGTGCGATGGAAAATTCAACCAAGTTCAGGCTGACGGAAAATTCCATATTGAAGATGAGGAGCCAATGATTGAGGTAGAAGAAGAGCCAGAGTTTGAGAAGCCAACTGATGTTAGCTTTGAAGAAGACTTCATTATCCGTGATGAAGACTTCACTGGCCGCGGCGGAATCTTCAATAGCCGCGACCATGGTGAAGACCTCACCAGCCACTGTGAAGGAGGTGAGGTGGATGAAGGAGTTGTAGCGTCATCATCGCTGAATCAGGTAATGACATTGTCAGCTGATAGAGGAGAGGCCACAAAAGGAATGAAAATAAGAGAAACAATGAAGATTAAGAAAATCGAAAAGAAACTTACCACATATGTAGAACGAGCAACCATAGACATACATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

278

Amino Acids

31.67

Weight (kDa)

4.69

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 122
AccII CGCG 3 cut(s) 344, 603, 624
AciI CCGC 6 cut(s) 342, 344, 601, 603, 606, 622
AcoI YGGCCR 1 cut(s) 598
AcsI RAATTY 3 cut(s) 417, 455, 482
AfaI GTAC 7 cut(s) 11, 41, 121, 236, 248, 262, 338
AfiI CCNNNNNNNGG 1 cut(s) 469
AgsI TTSAA 6 cut(s) 139, 301, 460, 494, 563, 616
AjiI CACGTC 1 cut(s) 51
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 6 cut(s) 35, 182, 292, 349, 558, 722
AluI AGCT 6 cut(s) 35, 182, 292, 349, 558, 722
AlwNI CAGNNNCTG 1 cut(s) 651
AoxI GGCC 3 cut(s) 44, 598, 735
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 3 cut(s) 417, 455, 482
Asp700I GAANNNNTTC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 4 cut(s) 311, 634, 644, 674
BbsI GAAGAC 3 cut(s) 573, 594, 642
BbvI GCAGC 1 cut(s) 279
BccI CCATC 3 cut(s) 158, 298, 443
BciT130I CCWGG 1 cut(s) 93
BciVI GTATCC 1 cut(s) 214
BfaI CTAG 2 cut(s) 62, 389
BfuAI ACCTGC 1 cut(s) 122
BfuI GTATCC 1 cut(s) 214
BglII AGATCT 1 cut(s) 214
BisI GCNGC 5 cut(s) 293, 342, 601, 604, 622
BlsI GCNGC 5 cut(s) 294, 343, 602, 605, 623
Bme1390I CCNGG 1 cut(s) 93
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 504
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 1 cut(s) 112
BpiI GAAGAC 3 cut(s) 573, 594, 642
BpuEI CTTGAG 3 cut(s) 119, 203, 353
BsaJI CCNNGG 4 cut(s) 91, 342, 601, 628
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse1I ACTGG 3 cut(s) 200, 432, 601
Bse3DI GCAATG 1 cut(s) 418
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 4 cut(s) 91, 342, 601, 628
BseGI GGATG 1 cut(s) 676
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMI GCAATG 1 cut(s) 418
BseNI ACTGG 3 cut(s) 200, 432, 601
BseRI GAGGAG 2 cut(s) 515, 744
BseXI GCAGC 1 cut(s) 279
BseYI CCCAGC 2 cut(s) 207, 349
BsgI GTGCAG 1 cut(s) 150
Bsh1236I CGCG 3 cut(s) 344, 603, 624
BshFI GGCC 3 cut(s) 46, 600, 737
BslI CCNNNNNNNGG 1 cut(s) 469
BsmI GAATGC 1 cut(s) 315
BsnI GGCC 3 cut(s) 46, 600, 737
Bsp143I GATC 1 cut(s) 214
Bsp19I CCATGG 1 cut(s) 628
BspACI CCGC 6 cut(s) 342, 344, 601, 603, 606, 622
BspANI GGCC 3 cut(s) 46, 600, 737
BspFNI CGCG 3 cut(s) 344, 603, 624
BspLI GGNNCC 1 cut(s) 504
BspMI ACCTGC 1 cut(s) 122
BspQI GCTCTTC 1 cut(s) 519
BsrDI GCAATG 1 cut(s) 418
BsrI ACTGG 3 cut(s) 200, 432, 601
BssECI CCNNGG 4 cut(s) 91, 342, 601, 628
BssMI GATC 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 628
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 2 cut(s) 190, 653
Bst6I CTCTTC 1 cut(s) 519
BstDSI CCRYGG 3 cut(s) 342, 601, 628
BstF5I GGATG 1 cut(s) 676
BstFNI CGCG 3 cut(s) 344, 603, 624
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstUI CGCG 3 cut(s) 344, 603, 624
BstV1I GCAGC 1 cut(s) 279
BstV2I GAAGAC 3 cut(s) 573, 594, 642
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuI GTATCC 1 cut(s) 214
BsuRI GGCC 3 cut(s) 46, 600, 737
BtgI CCRYGG 3 cut(s) 342, 601, 628
BtgZI GCGATG 2 cut(s) 462, 678
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 676
BtsIMutI CAGTG 2 cut(s) 594, 649
BveI ACCTGC 1 cut(s) 122
CaiI CAGNNNCTG 1 cut(s) 651
Cfr13I GGNCC 1 cut(s) 44
Cfr42I CCGCGG 2 cut(s) 345, 604
CseI GACGC 1 cut(s) 675
Csp6I GTAC 7 cut(s) 10, 40, 120, 235, 247, 261, 337
CviAII CATG 2 cut(s) 397, 629
CviQI GTAC 7 cut(s) 10, 40, 120, 235, 247, 261, 337
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 598
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
EciI GGCGGA 1 cut(s) 621
Eco130I CCWWGG 1 cut(s) 628
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 628
ErhI CCWWGG 1 cut(s) 628
FaeI CATG 2 cut(s) 400, 632
FatI CATG 2 cut(s) 396, 628
FauNDI CATATG 3 cut(s) 265, 802, 831
Fnu4HI GCNGC 5 cut(s) 293, 342, 601, 604, 622
FokI GGATG 1 cut(s) 683
Fsp4HI GCNGC 5 cut(s) 293, 342, 601, 604, 622
FspBI CTAG 2 cut(s) 62, 389
GluI GCNGC 5 cut(s) 293, 342, 601, 604, 622
GsaI CCCAGC 2 cut(s) 211, 353
HaeIII GGCC 3 cut(s) 46, 600, 737
HgaI GACGC 1 cut(s) 675
Hin1II CATG 2 cut(s) 400, 632
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 2 cut(s) 609, 700
HpaI GTTAAC 1 cut(s) 81
HphI GGTGA 4 cut(s) 311, 634, 644, 674
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 81
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 650, 668
HpyCH4III ACNGT 2 cut(s) 190, 653
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 3 cut(s) 115, 131, 411
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 2 cut(s) 400, 632
KspAI GTTAAC 1 cut(s) 81
KspI CCGCGG 2 cut(s) 345, 604
Kzo9I GATC 1 cut(s) 214
LguI GCTCTTC 1 cut(s) 519
LmnI GCTCC 2 cut(s) 346, 502
Lsp1109I GCAGC 1 cut(s) 279
LweI GCATC 1 cut(s) 112
MaeI CTAG 2 cut(s) 62, 389
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 271
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MflI RGATCY 1 cut(s) 214
MluCI AATT 3 cut(s) 417, 455, 482
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 8 cut(s) 279, 493, 508, 650, 653, 658, 722, 727
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 2 cut(s) 80, 774
MslI CAYNNNNRTG 1 cut(s) 830
MspA1I CMGCKG 3 cut(s) 344, 603, 722
MspR9I CCNGG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 315
MvaI CCWGG 1 cut(s) 93
MvnI CGCG 3 cut(s) 344, 603, 624
NcoI CCATGG 1 cut(s) 628
NdeI CATATG 3 cut(s) 265, 802, 831
NdeII GATC 1 cut(s) 214
NlaIII CATG 2 cut(s) 400, 632
NlaIV GGNNCC 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 519
PctI GAATGC 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 2 cut(s) 609, 700
PflFI GACNNNGTC 1 cut(s) 715
PkrI GCNGC 5 cut(s) 294, 343, 602, 605, 623
Psp6I CCWGG 1 cut(s) 91
PspFI CCCAGC 2 cut(s) 207, 349
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 1 cut(s) 44
PstNI CAGNNNCTG 1 cut(s) 651
PsuI RGATCY 1 cut(s) 214
PsyI GACNNNGTC 1 cut(s) 715
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 7 cut(s) 11, 41, 121, 236, 248, 262, 338
RsaNI GTAC 7 cut(s) 10, 40, 120, 235, 247, 261, 337
RseI CAYNNNNRTG 1 cut(s) 830
SacII CCGCGG 2 cut(s) 345, 604
SapI GCTCTTC 1 cut(s) 519
SaqAI TTAA 2 cut(s) 80, 774
SatI GCNGC 5 cut(s) 293, 342, 601, 604, 622
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 93
SfaNI GCATC 1 cut(s) 112
Sfr303I CCGCGG 2 cut(s) 345, 604
SgrBI CCGCGG 2 cut(s) 345, 604
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 3 cut(s) 98, 218, 332
SmoI CTYRAG 3 cut(s) 98, 218, 332
Sse9I AATT 3 cut(s) 417, 455, 482
SsiI CCGC 6 cut(s) 342, 344, 601, 603, 606, 622
SspMI CTAG 2 cut(s) 62, 389
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 1 cut(s) 628
TaaI ACNGT 2 cut(s) 190, 653
TaiI ACGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 783
TasI AATT 3 cut(s) 417, 455, 482
TatI WGTACW 3 cut(s) 119, 246, 260
TauI GCSGC 4 cut(s) 344, 603, 606, 624
TfiI GAWTC 2 cut(s) 609, 700
Tru1I TTAA 2 cut(s) 80, 774
Tru9I TTAA 2 cut(s) 80, 774
TscAI CASTG 2 cut(s) 601, 656
TseI GCWGC 1 cut(s) 292
TspDTI ATGAA 8 cut(s) 17, 410, 429, 562, 600, 687, 764, 782
TspGWI ACGGA 2 cut(s) 492, 569
TspRI CASTG 2 cut(s) 601, 656
Tth111I GACNNNGTC 1 cut(s) 715
XapI RAATTY 3 cut(s) 417, 455, 482
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 2 cut(s) 62, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.